View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20539_low_86 (Length: 237)
Name: NF20539_low_86
Description: NF20539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20539_low_86 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 44683311 - 44683533
Alignment:
| Q |
18 |
attgtggcatcccttgaagcaatgatgccaacatctctagatattgcattcatgtatttcaaacgagttatcacaacaccgcaaggagatgggcatccca |
117 |
Q |
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| T |
44683311 |
attgtggcatcccttgaagcaatgatgccaacatctctagatatcgcactcatgtatttcaaacgagttatcacaacaccgcaaggagatgggcatccca |
44683410 |
T |
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| Q |
118 |
aaaacttgtgacctgaaatagttacactgccaataggtttcttgaagctaacccttagagcctgtaa---catcaccaaaacaatattttagatgaaatc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44683411 |
aaaacttgtgacctgaaatagttacactgccaataggtttcttgaagctaacctttagagcctgtaacatcatcaccaaaacaatattttagatgaaatc |
44683510 |
T |
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| Q |
215 |
aagtaatcattcatttacggtat |
237 |
Q |
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| T |
44683511 |
aagtaatcattcatttacggtat |
44683533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 44660166 - 44660362
Alignment:
| Q |
18 |
attgtggcatcccttgaagcaatgatgccaacatctctagatattgcattcatgtatttcaaacgagttatcacaacaccgcaaggagatgggcatccca |
117 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
44660166 |
attgtggcatcccttgaagcaatgatgtcaacatctctagatagtgcattcatgtatttcaaacgagttatcaaaacaccacaaggtgatgggcatccca |
44660265 |
T |
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| Q |
118 |
aaaacttgtgacctgaaatagttacactgccaataggtttcttgaagctaacccttagagcctgtaacatcaccaaaacaatattttagatgaaatc |
214 |
Q |
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| T |
44660266 |
aaaacttatggcctgaaattgttacactgtcgatgggtttcttgaagctaatccttggagcctattcaatcagcaaagcaaaattttagataaaatc |
44660362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 29357644 - 29357453
Alignment:
| Q |
18 |
attgtggcatcccttgaagcaatgatgccaacatctctagatattgcattcatgtatttcaaacgagttatcacaacaccgcaaggagatgggcatccca |
117 |
Q |
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||||| ||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
29357644 |
attgtagcatcccttgaagcaatatattcaacatctctagatagtgcattgatatatttcaaacgagttatcaaaacaccacaaggaaatgggcatccca |
29357545 |
T |
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| Q |
118 |
aaaacttgtgacctgaaatagttacactgccaataggtttcttgaagctaacccttagagcctgtaacatcaccaaaacaatattttagatg |
209 |
Q |
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| T |
29357544 |
aaaacttatgacctgaaatagttacactgtcgataggtttcttgaagctaatccttagagcctataaaatcaccaaaataaaattttagatg |
29357453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 29341611 - 29341426
Alignment:
| Q |
24 |
gcatcccttgaagcaatgatgccaacatctctagatattgcattcatgtatttcaaacgagttatcacaacaccgcaaggagatgggcatcccaaaaact |
123 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
29341611 |
gcatcccttgaagcaatatattcaacatctctagatagtgcattgatatatttcaaacgagttatcaaaacaccacaaggagatgggcatcccaaaaact |
29341512 |
T |
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| Q |
124 |
tgtgacctgaaatagttacactgccaataggtttcttgaagctaacccttagagcctgtaacatcaccaaaacaatattttagatg |
209 |
Q |
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| T |
29341511 |
tatgacctgaaatagttacactgtcgataggtttcttgaagctaatccttagagcctacacaatcaccaaaataaaattttagatg |
29341426 |
T |
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