View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2053_high_2 (Length: 391)
Name: NF2053_high_2
Description: NF2053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2053_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 54214614 - 54214261
Alignment:
| Q |
1 |
tacatatacaaaaaagaagaatgttaaataacataactaacatgatccacaacaaaaatcaataatatataatcaaaaaagaagaatgtaaaatagcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54214614 |
tacatatacaaaaaagaagaatgttaaataacataactaacatgatccacaacaaaaatcaataatatataatcaaaaaagaagaatgtaaaatagcgtg |
54214515 |
T |
|
| Q |
101 |
attaacatgatatttataaatgtaggtaccgatgcgaatttatgtatgagtttctctaagagtatggaaatgataacgatgatcgcacaaaccgcggcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54214514 |
attaacatgatatttataaatgtaggtaccgatgcgaatttatgtatgagtttctctaagagtatggaaatgataacgatgatcgcacaaaccgcggcga |
54214415 |
T |
|
| Q |
201 |
cagcccatgtaggagtcacatctagctgtctggagtcaccgnnnnnnnnnnnnnnnnncatatttgattattgtcaattgataattaggtaatgatgatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54214414 |
cagcccatgtaggagtcacatctagctgtctggagtcaccgcctcctcctcctcctcccatatttgattattgtcaattgataattaggtaatgatgatg |
54214315 |
T |
|
| Q |
301 |
atgattaggataattgtaattatgtttatgatgatagtttgtttagagtgggat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54214314 |
atgattaggataattgtaattatgtttatgatgatagtttgtttagagtgggat |
54214261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University