View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2053_low_1 (Length: 452)
Name: NF2053_low_1
Description: NF2053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2053_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 42010714 - 42011157
Alignment:
| Q |
1 |
gctatacttcattctcaataggctaatttaaggtatgtctactcacgaattatgactgcactatctttcatgannnnnnnataaatagttcttaaatatt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
42010714 |
gctataattcattctcaataggctaatttaaggtatgtctgctcacgaattatgactgcactatctttcatgatttttttataaatagttattaaatatt |
42010813 |
T |
|
| Q |
101 |
aaatacattgtacagacaaaatgaaaaagactaatatgacatgcttttatatatattttaaatattaaatatgaaagagacta---attttttaggcact |
197 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42010814 |
aaatacattgtacagacaaaatgaaaaagactaatgtgacatgcttttatatatattttaaatattaaatatgaaagagactagtaattttttaggcact |
42010913 |
T |
|
| Q |
198 |
taattaatggtttacannnnnnnctttggtaaaacacttcatttccatgaccttcattttataaaattaattgcttggagttaataaataagtttgtggt |
297 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010914 |
taattaatggtttacatttttttctttggtaaaacacttcatttccatgaccttcattttataaaattaattgcttggagttaataaataagtttgtggt |
42011013 |
T |
|
| Q |
298 |
aaagtttaatatgaaaatttcattttatatggaaaaattatgccttctccttgaaagtacttgaaaaataccaatttaaactaaatttgaggtctttgat |
397 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011014 |
aaagtttaatatgaaaatttcattttatatggaaaagttatgctttctccttgaaagtacttgaaaaataccaatttaaactaaatttgaggtctttgat |
42011113 |
T |
|
| Q |
398 |
cgtccatccaatgagtttttaattaattttcaatatgagagtat |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011114 |
cgtccatccaatgagtttttaattaattttcaatatgagagtat |
42011157 |
T |
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