View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2053_low_4 (Length: 343)
Name: NF2053_low_4
Description: NF2053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2053_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 747919 - 747593
Alignment:
| Q |
1 |
aactagatacccttcactttgtataaactctctcttagatttccctggctcaacctcagcttctgagcaagaacttgttcatatctcattcaatatgaca |
100 |
Q |
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| T |
747919 |
aactagatacccttcactttgtataaactctctcttagatttccctggctcaacctcagcttctgagcaagaactagttcatatctcattcaatatgaca |
747820 |
T |
|
| Q |
101 |
catcgtcatatcagcaaagcactcttcgcctcctcaggtctctcgtatacagtcgcgaacccacgagttcgtgctgcatacgaggattgtcttgaactaa |
200 |
Q |
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| T |
747819 |
caccgtcacatcagcaaagcactcttcgcctcctcaggtctctcatatacagtcgcgaacccacgagttcgtgctgcatacgaggattgtcttgaactaa |
747720 |
T |
|
| Q |
201 |
tggacgagtccatggatgctatcagatcatccatggattctctcatgaccacgtcctcaactttatccaacgacgacggagaatcaagacaattctccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
747719 |
tggacgagtccatggatgctatcagatcatccatggactctctcatgaccacgtcctcaactttatccaacgacgacggtgaatcaagacaattctccaa |
747620 |
T |
|
| Q |
301 |
tgtcgctggatcaaccgaggatgtgat |
327 |
Q |
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| T |
747619 |
tgtcgctggatcaactgaggacgtgat |
747593 |
T |
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