View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2053_low_6 (Length: 241)
Name: NF2053_low_6
Description: NF2053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2053_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 42010618 - 42010704
Alignment:
| Q |
155 |
ggtaaagaaaaattaaggtgagacaaggatcctcctcattctagaatgcaatgacaaattaatttatatttgcctccctctaaagag |
241 |
Q |
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| T |
42010618 |
ggtaaagaaaaattaaggtgagacaaggatcctcctcattctagaatgcaatgacaaattaatttatatttgcctccctctaaagag |
42010704 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 42010478 - 42010552
Alignment:
| Q |
19 |
tttctttctatggttgtgatta----attcccaacaatacattgaccttaacattttggttttgtttacgtcaaa |
89 |
Q |
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| T |
42010478 |
tttcattctatggttgtgattaattaattcccaacaatacattgaccttaacattttggttttgtttacgtcaaa |
42010552 |
T |
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