View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2053_low_7 (Length: 241)
Name: NF2053_low_7
Description: NF2053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2053_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 6739778 - 6739603
Alignment:
| Q |
48 |
cggatagaacaataacgaacgaaaaacaaactgccaaaccagttatgctatcgccacttcaaagttcaaacaagcattaaaaccttaatctccagatata |
147 |
Q |
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| T |
6739778 |
cggatagaaaaatcacgaac-aaaaacaaactgccaaaccagttatgctattgctacttcaaagttcaaacaagcattaaaaccttaatctccaaatata |
6739680 |
T |
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| Q |
148 |
ataaattaagcaacctcaatcgagccaatccaattatgatgcaatctaaccaggacacgttaatatcattttacaag |
224 |
Q |
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| T |
6739679 |
ataaattaagcaacctcaatcgagccaatccaattatgatgcaatctaaccaggacacgttaatatcattttacaag |
6739603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6739622 - 6739575
Alignment:
| Q |
1 |
cgttaatatcattttacaagcacaaacaattagatacacatgttgttc |
48 |
Q |
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| T |
6739622 |
cgttaatatcattttacaagcacaaacaattagatacacatgttgttc |
6739575 |
T |
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