View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2053_low_8 (Length: 240)

Name: NF2053_low_8
Description: NF2053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2053_low_8
NF2053_low_8
[»] chr3 (13 HSPs)
chr3 (18-240)||(3610413-3610644)
chr3 (199-240)||(14829660-14829701)
chr3 (199-240)||(10335334-10335375)
chr3 (199-240)||(16000064-16000105)
chr3 (199-240)||(25064879-25064920)
chr3 (199-240)||(41961698-41961739)
chr3 (181-240)||(14223901-14223960)
chr3 (201-239)||(5441080-5441118)
chr3 (199-233)||(24205096-24205130)
chr3 (202-240)||(26492253-26492291)
chr3 (199-240)||(15796342-15796383)
chr3 (199-240)||(28917971-28918012)
chr3 (199-239)||(23915929-23915969)
[»] scaffold0053 (1 HSPs)
scaffold0053 (199-240)||(8768-8809)
[»] scaffold0003 (1 HSPs)
scaffold0003 (199-240)||(241564-241605)
[»] chr8 (7 HSPs)
chr8 (199-240)||(22651946-22651987)
chr8 (199-240)||(29510352-29510393)
chr8 (202-240)||(4673473-4673511)
chr8 (199-240)||(22197790-22197831)
chr8 (181-240)||(25192395-25192455)
chr8 (199-240)||(13437012-13437053)
chr8 (199-240)||(24362250-24362291)
[»] chr5 (12 HSPs)
chr5 (199-240)||(21522720-21522761)
chr5 (199-240)||(21533286-21533327)
chr5 (199-240)||(22013384-22013425)
chr5 (199-240)||(15382447-15382488)
chr5 (199-240)||(21191104-21191145)
chr5 (199-240)||(36642810-36642851)
chr5 (198-240)||(19552591-19552633)
chr5 (199-240)||(19820442-19820483)
chr5 (207-240)||(41995449-41995482)
chr5 (200-232)||(6326353-6326385)
chr5 (204-240)||(15410496-15410532)
chr5 (200-232)||(21711308-21711340)
[»] chr2 (6 HSPs)
chr2 (199-240)||(21624236-21624277)
chr2 (181-240)||(21782866-21782926)
chr2 (202-240)||(28596445-28596483)
chr2 (207-240)||(6940233-6940266)
chr2 (199-240)||(19536446-19536487)
chr2 (203-240)||(20539722-20539759)
[»] chr4 (6 HSPs)
chr4 (199-239)||(28084491-28084531)
chr4 (199-240)||(5414220-5414261)
chr4 (199-240)||(19482638-19482679)
chr4 (199-240)||(21945473-21945514)
chr4 (199-240)||(23293034-23293075)
chr4 (201-230)||(847923-847952)
[»] scaffold0171 (1 HSPs)
scaffold0171 (202-240)||(23393-23431)
[»] chr7 (11 HSPs)
chr7 (202-240)||(24105651-24105689)
chr7 (200-239)||(11722147-11722186)
chr7 (202-240)||(4793836-4793874)
chr7 (202-240)||(13770664-13770702)
chr7 (199-233)||(27945011-27945045)
chr7 (203-240)||(5235960-5235997)
chr7 (199-232)||(13557800-13557833)
chr7 (199-240)||(24339612-24339653)
chr7 (203-232)||(26329438-26329467)
chr7 (181-240)||(21864757-21864817)
chr7 (208-240)||(22484004-22484036)
[»] chr6 (13 HSPs)
chr6 (202-240)||(12696297-12696335)
chr6 (202-240)||(16833281-16833319)
chr6 (199-240)||(7938086-7938127)
chr6 (199-240)||(9107418-9107459)
chr6 (199-240)||(16766667-16766708)
chr6 (200-240)||(426562-426602)
chr6 (205-240)||(3398595-3398630)
chr6 (201-240)||(9027150-9027189)
chr6 (202-240)||(8777021-8777059)
chr6 (199-240)||(3209352-3209392)
chr6 (199-240)||(8365567-8365608)
chr6 (199-240)||(34595104-34595145)
chr6 (204-240)||(9658854-9658890)
[»] chr1 (9 HSPs)
chr1 (202-240)||(5944254-5944292)
chr1 (202-240)||(14359569-14359607)
chr1 (199-240)||(398813-398854)
chr1 (199-240)||(10577783-10577824)
chr1 (199-240)||(40917721-40917762)
chr1 (199-240)||(48040510-48040551)
chr1 (204-234)||(47989473-47989503)
chr1 (202-240)||(48450635-48450673)
chr1 (200-240)||(1262855-1262895)
[»] scaffold0223 (1 HSPs)
scaffold0223 (199-240)||(20142-20183)
[»] scaffold0018 (1 HSPs)
scaffold0018 (199-240)||(178867-178908)
[»] scaffold0007 (1 HSPs)
scaffold0007 (199-240)||(225316-225357)
[»] scaffold0116 (1 HSPs)
scaffold0116 (199-240)||(9868-9909)
[»] scaffold0068 (1 HSPs)
scaffold0068 (200-232)||(2570-2602)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 3610413 - 3610644
Alignment:
Q  18 gggaagactcctgaggatgttaagagacact--gaacatctcctaagggatgttaggcacattgaatcaggtcaagttgcattcccaaattacaagaaca 115  Q
    |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3610413 gggaagactcctgaggatgttaagagacactatgaacacctcctaagggatgttaggcacattgaatcaggtcaagttgcattcccaaattacaagaaca 3610512  T
Q  116 ttggaggctatgatgaagaaaaaaggtattatacattgtttcaattttttcttataaacatatattatgaagcacgaatac-------accaccggacac 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||    
T  3610513 ttggaggctatgatgaggaaaaaaggtattatacattgtttcaattttttcttataaacatatattatgaagcacgaatacatccacgaacaccggacac 3610612  T
Q  209 gacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||| |||||| ||||    
T  3610613 gacacagacactgacacgccaacacagttaat 3610644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 14829660 - 14829701
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  14829660 caccggacatgacacagacactgacacgccgacacagctaat 14829701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 10335375 - 10335334
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  10335375 caccggacacgacacggacactgacacgccgacacaactaat 10335334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 16000105 - 16000064
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  16000105 caccgaacacgacacagacactgacacgccgacacaactaat 16000064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 25064879 - 25064920
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  25064879 caccggacacgacacagacattgacacgccgacaccgctaat 25064920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 41961739 - 41961698
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  41961739 caccggacacgacacagacactgacacgccgtcacaactaat 41961698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 14223960 - 14223901
Alignment:
Q  181 tatgaagcacgaatacaccaccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||| |||    |||||||||||||||||| ||||||||||||||| ||||    
T  14223960 tatgaagcacgaacacagacacggacacgacacagacaccgacacgccgacacagataat 14223901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 5441118 - 5441080
Alignment:
Q  201 ccggacacgacacagacactgacacgccgacacagctaa 239  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  5441118 ccggacacgacacagacactgacacgccgtcaccgctaa 5441080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 24205130 - 24205096
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacac 233  Q
    ||||||||||||||| |||||||||||||||||||    
T  24205130 caccggacacgacacggacactgacacgccgacac 24205096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 26492291 - 26492253
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaat 26492253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 15796383 - 15796342
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||| |||||||||||||||| ||||    
T  15796383 caccggacacgacacggacaatgacacgccgacacagttaat 15796342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 28917971 - 28918012
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| || ||||||||||||||| |||||||    
T  28917971 caccggacacgacacggaaactgacacgccgacatagctaat 28918012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 23915929 - 23915969
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaa 239  Q
    |||||||||||||||||| ||||||| ||| ||||||||||    
T  23915929 caccggacacgacacagaaactgacatgccaacacagctaa 23915969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 8768 - 8809
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  8768 caccggacacgacacggacactgacacgccgacacagctaat 8809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 241564 - 241605
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  241564 caccggacacgacacggacactgacacgccgacacagctaat 241605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 22651946 - 22651987
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  22651946 caccggacacgacacggacactgacacgccgacacagctaat 22651987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 29510393 - 29510352
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29510393 caccggacacgacacggacactgacacgccgacacagctaat 29510352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 4673511 - 4673473
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  4673511 cggacacgacacagacactgacacgccgacacagataat 4673473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 22197831 - 22197790
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  22197831 caccggacacgacacagacactaacacgccaacacagctaat 22197790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 25192455 - 25192395
Alignment:
Q  181 tatgaagcacgaatacac-caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||||   || ||||||||| || ||||||||||||||||||||||||||    
T  25192455 tatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaat 25192395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 13437053 - 13437012
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||| ||||  ||||||||||||||||||||||||||    
T  13437053 caccggacatgacatggacactgacacgccgacacagctaat 13437012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 24362291 - 24362250
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||    
T  24362291 caccggatacgacacagacaccgacacgccgacaccgctaat 24362250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 21522720 - 21522761
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  21522720 caccggacacgacacggacactgacacgccgacacagctaat 21522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 21533286 - 21533327
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  21533286 caccggacacgacacggacactgacacgccgacacagctaat 21533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 22013384 - 22013425
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  22013384 caccggacacgacacggacactgacacgccgacacagctaat 22013425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 15382447 - 15382488
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  15382447 caccggacacgacacggacaatgacacgccgacacagctaat 15382488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 21191145 - 21191104
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  21191145 caccggacacgacacggacactgacatgccgacacagctaat 21191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 36642851 - 36642810
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  36642851 caccggacacgacacggacactgacacgccgacacagttaat 36642810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 19552633 - 19552591
Alignment:
Q  198 ccaccggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  19552633 ccaccgaacacgacacggacactgacacgccgacacagttaat 19552591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 19820483 - 19820442
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||    
T  19820483 caccggacacgacacggacactgacactccgacaccgctaat 19820442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 41995449 - 41995482
Alignment:
Q  207 acgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||||||||||| |||||    
T  41995449 acgacacagacactgacacgccgacacaactaat 41995482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 6326385 - 6326353
Alignment:
Q  200 accggacacgacacagacactgacacgccgaca 232  Q
    |||||||||||||| ||||||||||||||||||    
T  6326385 accggacacgacacggacactgacacgccgaca 6326353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 15410532 - 15410496
Alignment:
Q  204 gacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaat 15410496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 21711340 - 21711308
Alignment:
Q  200 accggacacgacacagacactgacacgccgaca 232  Q
    ||||||||||||||||||||||||| |||||||    
T  21711340 accggacacgacacagacactgacatgccgaca 21711308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 21624236 - 21624277
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  21624236 caccgaacacgacacagacactgacacgccgacacagctaat 21624277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 21782926 - 21782866
Alignment:
Q  181 tatgaagcacgaatacac-caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||  ||| |||||||||||| |||||||||||||||||| ||||||    
T  21782926 tatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaat 21782866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 28596445 - 28596483
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  28596445 cggacacgacacggacaatgacacgccgacacagctaat 28596483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 6940233 - 6940266
Alignment:
Q  207 acgacacagacactgacacgccgacacagctaat 240  Q
    ||||||| ||||||||||||||||||||||||||    
T  6940233 acgacacggacactgacacgccgacacagctaat 6940266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 19536487 - 19536446
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||| ||||||||||||||| |||||    
T  19536487 caccggacacgacacggacaatgacacgccgacacaactaat 19536446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 20539759 - 20539722
Alignment:
Q  203 ggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  20539759 ggacacgacacggacactgacacgtcgacacagctaat 20539722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 28084491 - 28084531
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaa 239  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  28084491 caccggacacgacacagacgctgacacgccgacacagctaa 28084531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 5414261 - 5414220
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  5414261 caccggacacgacacggacacggacacgccgacacagctaat 5414220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 19482638 - 19482679
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  19482638 caccagacacgacacagacactgacacgccgacacaactaat 19482679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 21945473 - 21945514
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  21945473 caccggacatgacacagacactgacatgccgacacagctaat 21945514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 23293075 - 23293034
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  23293075 caccggacacgacacggacaatgacacgccgacacagctaat 23293034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 847923 - 847952
Alignment:
Q  201 ccggacacgacacagacactgacacgccga 230  Q
    ||||||||||||||||||||||||||||||    
T  847923 ccggacacgacacagacactgacacgccga 847952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 23393 - 23431
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  23393 cggacacgacacagacactgacacgccgacacagataat 23431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 24105651 - 24105689
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  24105651 cggacacgacacggacactgacacgccgacacagctaat 24105689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 11722186 - 11722147
Alignment:
Q  200 accggacacgacacagacactgacacgccgacacagctaa 239  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  11722186 accggacacgacacggacactgacacgccgacaccgctaa 11722147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 4793836 - 4793874
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  4793836 cggacacgacacagacactgacacgtcgatacagctaat 4793874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 13770664 - 13770702
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  13770664 cggacacgacacggacactgatacgccgacacagctaat 13770702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 27945011 - 27945045
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacac 233  Q
    ||||||||||||||| |||||||||||||||||||    
T  27945011 caccggacacgacacggacactgacacgccgacac 27945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 5235960 - 5235997
Alignment:
Q  203 ggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  5235960 ggacacgacacagacactgacacgtcgacaccgctaat 5235997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 13557833 - 13557800
Alignment:
Q  199 caccggacacgacacagacactgacacgccgaca 232  Q
    ||||||||| ||||||||||||||||||||||||    
T  13557833 caccggacatgacacagacactgacacgccgaca 13557800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 24339612 - 24339653
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||  |||| |||||||||||||||||||||    
T  24339612 caccggacacgacatggacattgacacgccgacacagctaat 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Complemental strand, 26329467 - 26329438
Alignment:
Q  203 ggacacgacacagacactgacacgccgaca 232  Q
    ||||||||||||||||||||||||||||||    
T  26329467 ggacacgacacagacactgacacgccgaca 26329438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 21864757 - 21864817
Alignment:
Q  181 tatgaagcacgaatacac-caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||| |||||| || |||||||||||| ||||| ||||| | ||||||||||||    
T  21864757 tatgaagcacggatacacacatcggacacgacacggacacggacacacggacacagctaat 21864817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 22484004 - 22484036
Alignment:
Q  208 cgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||||||||| ||||||    
T  22484004 cgacacagacactgacacgccgacaccgctaat 22484036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 12696297 - 12696335
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  12696297 cggacacgacacggacactgacacgccgacacagctaat 12696335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 16833281 - 16833319
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  16833281 cggacacgacacagacactgacacgccgacacaactaat 16833319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 7938086 - 7938127
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  7938086 caccggacacgacatggacactgacacgccgacacagctaat 7938127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 9107459 - 9107418
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  9107459 caccggacacgacacggacactaacacgccgacacagctaat 9107418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 16766667 - 16766708
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  16766667 caccggacacgacatggacactgacacgccgacacagctaat 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 426602 - 426562
Alignment:
Q  200 accggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  426602 accggacacgacacggacactgacacgccgacacagttaat 426562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 3398595 - 3398630
Alignment:
Q  205 acacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3398595 acacgacacggacactgacacgccgacacagctaat 3398630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 9027150 - 9027189
Alignment:
Q  201 ccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  9027150 ccggacacgacacggacactgacacgccgacaccgctaat 9027189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 8777059 - 8777021
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  8777059 cggacacgacacggacactgacacgccgacacaactaat 8777021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 3209352 - 3209392
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  3209352 caccggacacgacac-gacacagacacgccgacacagctaat 3209392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 8365608 - 8365567
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||| |||||||||| |||||||||||||||||||| |||||    
T  8365608 caccagacacgacacggacactgacacgccgacacaactaat 8365567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 34595104 - 34595145
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||| ||||||||||||||| |||||    
T  34595104 caccggacacgacacggacaatgacacgccgacacaactaat 34595145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 9658854 - 9658890
Alignment:
Q  204 gacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaat 9658890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 5944254 - 5944292
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  5944254 cggacacgacacagacactgacacgccgccacagctaat 5944292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 14359607 - 14359569
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14359607 cggacacgacacagacacggacacgccgacacagctaat 14359569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 398854 - 398813
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  398854 caccggacacgacacggacactgacacgccgacaccgctaat 398813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 10577824 - 10577783
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  10577824 caccggacacgacacggacaccgacacgccgacacagctaat 10577783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 40917721 - 40917762
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  40917721 caccggacacgacacggatactgacacgccgacacagctaat 40917762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 48040551 - 48040510
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  48040551 caccggacacgacacggacactgacacgccgacacagataat 48040510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 47989473 - 47989503
Alignment:
Q  204 gacacgacacagacactgacacgccgacaca 234  Q
    |||||||||||||||||||||||||||||||    
T  47989473 gacacgacacagacactgacacgccgacaca 47989503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 48450673 - 48450635
Alignment:
Q  202 cggacacgacacagacactgacacgccgacacagctaat 240  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  48450673 cggacacgacacggacactgacacgccaacacagctaat 48450635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 1262855 - 1262895
Alignment:
Q  200 accggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  1262855 accggacacgacacgaacacggacacgccgacacagctaat 1262895  T

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Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 20142 - 20183
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  20142 caccggacacgacacggacaatgacacgccgacacagctaat 20183  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 178908 - 178867
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  178908 caccggacacgacacggacactgacacgccgacacaactaat 178867  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 225357 - 225316
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  225357 caccggacacgacacggacactgacacgccgacacagataat 225316  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 9868 - 9909
Alignment:
Q  199 caccggacacgacacagacactgacacgccgacacagctaat 240  Q
    ||||||||||||||  ||||| ||||||||||||||||||||    
T  9868 caccggacacgacatggacaccgacacgccgacacagctaat 9909  T

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Target: scaffold0068 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 2570 - 2602
Alignment:
Q  200 accggacacgacacagacactgacacgccgaca 232  Q
    ||||||||||||||||||||||||| |||||||    
T  2570 accggacacgacacagacactgacatgccgaca 2602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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