View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2053_low_9 (Length: 239)

Name: NF2053_low_9
Description: NF2053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2053_low_9
NF2053_low_9
[»] chr6 (3 HSPs)
chr6 (9-215)||(10117172-10117376)
chr6 (22-87)||(32296380-32296445)
chr6 (45-98)||(9177634-9177684)
[»] chr8 (3 HSPs)
chr8 (22-98)||(23490047-23490122)
chr8 (22-98)||(7154346-7154422)
chr8 (22-73)||(14867355-14867406)
[»] chr2 (8 HSPs)
chr2 (23-98)||(37794729-37794803)
chr2 (22-98)||(17989065-17989140)
chr2 (22-98)||(35016459-35016534)
chr2 (96-163)||(409818-409885)
chr2 (106-157)||(1399319-1399370)
chr2 (106-157)||(1403014-1403065)
chr2 (135-189)||(404557-404611)
chr2 (22-66)||(5428657-5428701)
[»] chr7 (7 HSPs)
chr7 (30-96)||(39653536-39653602)
chr7 (22-98)||(25635981-25636057)
chr7 (33-98)||(45435419-45435484)
chr7 (25-98)||(10493487-10493560)
chr7 (30-98)||(47363781-47363848)
chr7 (111-163)||(1446151-1446203)
chr7 (22-77)||(33049132-33049187)
[»] chr4 (7 HSPs)
chr4 (22-98)||(55606324-55606399)
chr4 (22-98)||(28146999-28147074)
chr4 (22-98)||(38411946-38412022)
chr4 (22-87)||(11440605-11440670)
chr4 (22-98)||(13198158-13198233)
chr4 (30-91)||(25968024-25968084)
chr4 (39-98)||(46308430-46308488)
[»] chr3 (5 HSPs)
chr3 (22-98)||(11783484-11783560)
chr3 (98-187)||(45810728-45810817)
chr3 (30-90)||(7299132-7299192)
chr3 (24-73)||(19596541-19596590)
chr3 (22-67)||(21926543-21926588)
[»] chr1 (6 HSPs)
chr1 (22-87)||(32617658-32617722)
chr1 (40-98)||(12990549-12990606)
chr1 (34-95)||(34664806-34664867)
chr1 (22-84)||(24699887-24699949)
chr1 (24-98)||(9457636-9457709)
chr1 (24-98)||(9461733-9461806)
[»] chr5 (5 HSPs)
chr5 (22-99)||(39426166-39426243)
chr5 (32-98)||(41283518-41283582)
chr5 (22-90)||(13424721-13424789)
chr5 (22-91)||(22927149-22927219)
chr5 (116-172)||(36198875-36198931)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 10117172 - 10117376
Alignment:
Q  9 gagagagatgaattgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaataatgagacaa 108  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  10117172 gagatagatgaattgaaaatcatatttttagtacatatttgatcataaattacataata--atctccttatctagtttagaactccaaataatgagacaa 10117269  T
Q  109 accttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaatataacaataacacatggtaatatatgctctttttaattatctta 208  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10117270 accttgaatagttgtatgcctagaaactccaaatttgaaagtgctttcatcggaatataacaataacacatggtaatatatgctctttttaattgtctta 10117369  T
Q  209 agttttc 215  Q
    |||||||    
T  10117370 agttttc 10117376  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 32296380 - 32296445
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagttta 87  Q
    ||||||| |||||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  32296380 tgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 32296445  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 9177634 - 9177684
Alignment:
Q  45 atttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||||||||    
T  9177634 atttgatcataaattacataatgttatctc---acctagtttagaactccaaat 9177684  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 23490122 - 23490047
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23490122 tgaaaatcatatttttcgtacatatttgatcataaattacataa-gttatctccttatctagtttagaactccaaat 23490047  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 7154422 - 7154346
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| ||||||||  |||||||||||||||| ||||||||||  |||||||||||||  || ||||||| ||||    
T  7154422 tgaaaatcatatttttaatacatatttgatcatatattacataattatatctccttatctgattcagaactcaaaat 7154346  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 14867406 - 14867355
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatct 73  Q
    ||||||| | |||||| |||||||||||| |||||||||||| |||||||||    
T  14867406 tgaaaatcacatttttagtacatatttgaacataaattacatgatgttatct 14867355  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 37794803 - 37794729
Alignment:
Q  23 gaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37794803 gaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagtttagaactccaaat 37794729  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 17989140 - 17989065
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17989140 tgaaaatcatatttttagtacatatttgatcataaattatataat-ttatctccttatctagtttagaactccaaat 17989065  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 35016534 - 35016459
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  35016534 tgaaaatcatatttttgatacatatttgatcataaattatataa-gttatctccttatctagtttagaattccaaat 35016459  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 409885 - 409818
Alignment:
Q  96 aataatgagacaaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaa 163  Q
    ||||| || ||||||||  ||||||||||| | || |||||||||||||||||| | |||||||||||    
T  409885 aataacgaaacaaacctccaatagttgtatacgtagaaactccaaatttgaaagcgatttcatcggaa 409818  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 1399370 - 1399319
Alignment:
Q  106 caaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttca 157  Q
    ||||||||| |||||||||||| || |||||||| ||||||||||| |||||    
T  1399370 caaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 1399319  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 1403065 - 1403014
Alignment:
Q  106 caaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttca 157  Q
    ||||||||| |||||||||||| || |||||||| ||||||||||| |||||    
T  1403065 caaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 1403014  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 404611 - 404557
Alignment:
Q  135 ctccaaatttgaaagtgctttcatcggaatataacaataacacatggtaatatat 189  Q
    ||||| ||||||||||||||||||||||| ||| |||||| | | ||||||||||    
T  404611 ctccacatttgaaagtgctttcatcggaaaatagcaataatagagggtaatatat 404557  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 5428657 - 5428701
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataat 66  Q
    ||||||| ||||| || ||||||| ||||||||||||||||||||    
T  5428657 tgaaaatcatattattagtacataattgatcataaattacataat 5428701  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 39653602 - 39653536
Alignment:
Q  30 atatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaa 96  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39653602 atatttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaactccaa 39653536  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 25636057 - 25635981
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| |||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25636057 tgaaaatcatatctttagtacatatttaatcataaattacataatgttatctccttgtctagtttagaactccaaat 25635981  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 45435419 - 45435484
Alignment:
Q  33 tttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  45435419 tttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaacttcaaat 45435484  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 10493560 - 10493487
Alignment:
Q  25 aaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    |||| ||||||||  | |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  10493560 aaatcatatttttaatgcatatttgatcataaattacataatgttatctccttatatagtttagacctccaaat 10493487  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 47363848 - 47363781
Alignment:
Q  30 atatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  47363848 atatttttagtacatatttgatcatagattacataa-gttatctccttatctagtttagaacttcaaat 47363781  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 1446151 - 1446203
Alignment:
Q  111 cttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaa 163  Q
    |||| |||||| ||||| || |||||||| |||||||||||||||||||||||    
T  1446151 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaa 1446203  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 33049132 - 33049187
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctcctt 77  Q
    ||||||| | |||||| |||||||||||| ||||||||||| || |||||||||||    
T  33049132 tgaaaatcacatttttagtacatatttgaacataaattacagaaggttatctcctt 33049187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 55606399 - 55606324
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  55606399 tgaaaattatatttttagtacatatttgatcataaattacataa-gttatttccttatatagtttagaactccaaat 55606324  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 28146999 - 28147074
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  28146999 tgaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctaatttagaattccaaat 28147074  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 38412022 - 38411946
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| ||||||||  |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  38412022 tgaaaatcatatttttactacatacttgattataaattacataatgttatttccttatctagtttagaactccaaat 38411946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 11440605 - 11440670
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagttta 87  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  11440605 tgaaaatcatatttttagtacatatttgatcataaattacataatgttatcttcttatatagttta 11440670  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 13198233 - 13198158
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| ||||| || || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  13198233 tgaaaatcatattcttagtgcatatttgatcataaattacataa-gttatctccttatctaatttagaactccaaat 13198158  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 25968024 - 25968084
Alignment:
Q  30 atatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaac 91  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  25968024 atatttttggtacatatttgataataaattacataa-gttatcttcttatctagtttagaac 25968084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 46308488 - 46308430
Alignment:
Q  39 gtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  46308488 gtacatatttgatcataaattacataa-gttatctccttagttagtttagaactctaaat 46308430  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 11783560 - 11783484
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  11783560 tgaaaatcatatttttagtacatatttgatcataaattacacaatgttgtctccttgtctagtttagaactccaaat 11783484  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 45810728 - 45810817
Alignment:
Q  98 taatgagacaaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaatataacaataacacatggtaatat 187  Q
    ||||||||||||||| | ||||||| ||||  | |||||||||||| ||||||||||||||||||| ||| |||||||| || |||||||    
T  45810728 taatgagacaaacctcggatagttgaatgcggagaaactccaaattcgaaagtgctttcatcggaaaatagcaataacagatagtaatat 45810817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 7299132 - 7299192
Alignment:
Q  30 atatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaa 90  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  7299132 atattttaagtacatatttaatcataaattacataatgttatctccttatctactttagaa 7299192  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 19596590 - 19596541
Alignment:
Q  24 aaaattatatttttggtacatatttgatcataaattacataatgttatct 73  Q
    ||||| |||||||| ||||| |||||| ||||| ||||||||||||||||    
T  19596590 aaaatcatatttttagtacaaatttgaacataagttacataatgttatct 19596541  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 21926588 - 21926543
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatg 67  Q
    ||||||| |||||||  |||||||||| ||||||||||||||||||    
T  21926588 tgaaaatcatattttcagtacatatttaatcataaattacataatg 21926543  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 32617722 - 32617658
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagttta 87  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32617722 tgaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagttta 32617658  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 12990549 - 12990606
Alignment:
Q  40 tacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  12990549 tacatatttgatcataaattacataat-ttatctccttatctagtttagaacttcaaat 12990606  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 34664806 - 34664867
Alignment:
Q  34 ttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactcca 95  Q
    |||| |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  34664806 ttttagtacgtatttgatcataaattacataacgttatcttcttatctagtttagaactcca 34664867  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 24699949 - 24699887
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagt 84  Q
    |||||||||||||||| ||| ||||||||| ||| |||||||||||||||||  |||||||||    
T  24699949 tgaaaattatatttttcgtatatatttgataatatattacataatgttatctttttatctagt 24699887  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 9457636 - 9457709
Alignment:
Q  24 aaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||| ||||||||| ||||||| |||||||||||||| | | |||||||||||| || ||||||||||| ||||    
T  9457636 aaaatcatatttttgatacatatctgatcataaattac-tcaagttatctccttaccttgtttagaactcaaaat 9457709  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 9461733 - 9461806
Alignment:
Q  24 aaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    ||||| ||||||||| ||||||| |||||||||||||| | | |||||||||||| || ||||||||||| ||||    
T  9461733 aaaatcatatttttgatacatatctgatcataaattac-tcaagttatctccttaccttgtttagaactcaaaat 9461806  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 39426243 - 39426166
Alignment:
Q  22 tgaaaattatat-ttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaata 99  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  39426243 tgaaaatcatatattttagtacatatttgatcataaattacataatgtcatctccttatatagtttagaa-tccaaata 39426166  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 41283518 - 41283582
Alignment:
Q  32 atttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 98  Q
    |||||| ||||| || ||||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  41283518 atttttagtacaaatctgatcataaatta-ataa-gttatctccttatctagtttagaacttcaaat 41283582  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 13424789 - 13424721
Alignment:
Q  22 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctcctt-atctagtttagaa 90  Q
    ||||||| |||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| |||||||    
T  13424789 tgaaaataatatttttagtacatatttgatcataaatcacgtaa-gttatctccttaatctattttagaa 13424721  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 22927219 - 22927149
Alignment:
Q  22 tgaaaattatatttttggtacata--tttgatcataaattacataatgttatctccttatctagtttagaac 91  Q
    ||||||| |||||||| ||||| |  ||||||||||||| ||||| ||||||||| || |||||||||||||    
T  22927219 tgaaaatcatattttttgtacacacatttgatcataaatcacata-tgttatctcattgtctagtttagaac 22927149  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 36198931 - 36198875
Alignment:
Q  116 atagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaatataacaat 172  Q
    |||||||||| |||| ||||||| ||||  ||||||||||||| ||||||| |||||    
T  36198931 atagttgtattcttagaaactccgaattaaaaagtgctttcattggaatatcacaat 36198875  T

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