View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20540_high_1 (Length: 469)
Name: NF20540_high_1
Description: NF20540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20540_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 19285587 - 19285185
Alignment:
| Q |
12 |
catcatcatttcgaataaaataatcatcttccagagcatgtcaatctatttccattcgtgaatcaatttggaggttgcactagctagcta--------ct |
103 |
Q |
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| T |
19285587 |
catcatcatttcgaataaaataatcatcttccagagcatgtcaatctatttccattcgtgaatcaatttggaggttgcactagctagctagatatatact |
19285488 |
T |
|
| Q |
104 |
tataatttggttaagggaatgggaaaggaagggtttttaaatatactttaataagaatactattctttcaatttcatttatactattttcttgatttatg |
203 |
Q |
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| T |
19285487 |
tataatttggttaaggaaatgggaaaggaagggtttttaaatatactttaataagaatactattctttcaatttcatttatactattttcttgatttatg |
19285388 |
T |
|
| Q |
204 |
tgaatcgatcaattgggtcattcattttaagatggagagaataatattannnnnnnctgttaaattcttgcatttaatagtgatataatttttaaataaa |
303 |
Q |
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| T |
19285387 |
tgaatcgatcaattggatcattcattttaagatggagagaatattttt-----tttctgataaattcttgcatttaatagtgttagaatttttaaataaa |
19285293 |
T |
|
| Q |
304 |
tatttcatcaatgttgaccgcccaaagcttgatcaagctagtcataacggccttaggttatgcaagttagact--aaaaatcccgcctaaaattcaaacg |
401 |
Q |
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| T |
19285292 |
tatttcatcaatgttgaccgtccaaagcttgatcaagctagtcataacggccttaggttatgcaagttagactaaaaaaaccccgcctaaaattcaaaca |
19285193 |
T |
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| Q |
402 |
gaacattt |
409 |
Q |
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| |||||| |
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| T |
19285192 |
ggacattt |
19285185 |
T |
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