View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20540_high_3 (Length: 301)
Name: NF20540_high_3
Description: NF20540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20540_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 11106796 - 11107078
Alignment:
| Q |
9 |
gcaagagatgacattactcatgactcaatgtcttagtgaaggtagagttgtgcaagacaatatgtcaccaatggatatgagttatcttgcttggttgatt |
108 |
Q |
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| T |
11106796 |
gcaagagatgacattactcatgactcaatgtcttagtgaaggtagagttgtgcaagacaatatgtcaacaatggatatgagttatcttgcttggttgatt |
11106895 |
T |
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| Q |
109 |
gaccacaatttgaaggatgttgctagacgtttggaagcatgtgatatcaatgatcaaaatcaaatcatggctattcaaaaccaagtccaactcgaaatgg |
208 |
Q |
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| T |
11106896 |
gaccacaatttgaaggatgttgctagacgtttggaagcatgtgatatcaatgatcaaaatcaaatcatggctattcaaaaccaagtccaactcgaaatgg |
11106995 |
T |
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| Q |
209 |
cggaaacagtgccaccaccacctctagcaccatctaggagtgaagaaatggcaattatgggtcatggccatgtaatgatgatg |
291 |
Q |
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| T |
11106996 |
cggcaacagtgccaccaccacctctagcaccatctaggagtgaagaaatggcaattatgggtcatggccatgtaatgatgatg |
11107078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 10987087 - 10987324
Alignment:
| Q |
10 |
caagagatgacattactcatgactcaatgtcttagtgaaggtagagttgtgcaagacaatatgtcaccaatggatatgagttatcttgcttggttgattg |
109 |
Q |
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| T |
10987087 |
caagagatgacaataatcatgtctcaatgtctcaatgaaggtagagttgtgcacgacaatatgtcaacaatggatatgagttatcttgcttggttgattg |
10987186 |
T |
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| Q |
110 |
accacaatttgaaggatgttgctagacgtttggaagcatgtgatatcaatgatcaaaatcaaatcatggctattcaaaaccaagtccaactcgaaatggc |
209 |
Q |
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| T |
10987187 |
accataaattgaaggacgttgctagacgtttggaagcatgggataacaatgatcaaaatcaaatcatggctattcaaaacaaagtccaactcgaaatggc |
10987286 |
T |
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| Q |
210 |
ggaaacagt---gccaccaccacctctagcaccatcta |
244 |
Q |
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| T |
10987287 |
ggcaacagtaccaccaccaccacctctagcaccatcta |
10987324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 11096101 - 11096236
Alignment:
| Q |
9 |
gcaagagatgacattactcatgactcaatgtcttagtgaaggtagagttgtgcaagacaatatgtcaccaatggatatgagttatcttgcttggttgatt |
108 |
Q |
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| T |
11096101 |
gcaagagatgacattactcatgactcaatgtcttaatgaaggtaaagttgtgcacgacaatttgccaacagatgatttgagtgatctttcttggttgatt |
11096200 |
T |
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| Q |
109 |
gaccacaatttgaaggatgttgctagacgtttggaa |
144 |
Q |
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| T |
11096201 |
gaccataatttgaaggacattggtagacgtttggaa |
11096236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 11100125 - 11100204
Alignment:
| Q |
202 |
gaaatggcggaaacagtgccaccaccacctctagcaccatctaggagtgaagaaatggcaattatgggtcatggccatgt |
281 |
Q |
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| T |
11100125 |
gaaatcgcggcaacagtaccaacgccacctctagcagcatctaggagtgaagaaatggcaattatgggtgatggccatgt |
11100204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 11100051 - 11100126
Alignment:
| Q |
86 |
tgagttatcttgcttggttgattgaccacaatttgaaggatgttgctagacgtttggaagcatgtgatatcaatga |
161 |
Q |
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| T |
11100051 |
tgagttatctttcttggttgattgaccataatttgatcgatgttggtagacgtttggaagcgtgggataacaatga |
11100126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 13308578 - 13308611
Alignment:
| Q |
92 |
atcttgcttggttgattgaccacaatttgaagga |
125 |
Q |
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| T |
13308578 |
atcttgcttggttgattgaccaaaatttgaagga |
13308611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 15076074 - 15076107
Alignment:
| Q |
92 |
atcttgcttggttgattgaccacaatttgaagga |
125 |
Q |
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| T |
15076074 |
atcttgcttggttgattgaccaaaatttgaagga |
15076107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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