View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20540_high_4 (Length: 267)
Name: NF20540_high_4
Description: NF20540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20540_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 47023883 - 47023624
Alignment:
| Q |
1 |
tctattttgaaatatccgattgtatcaaaactcttcttactaatgatatgctataagaactttcctttnnnnnnnnnnnn--gtgccctgtttcattatt |
98 |
Q |
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| T |
47023883 |
tctattttaaaatatccgattgtatcgaaactcttcttactaatgatatgctataagaactttccttaaaaaaaaaaaaaaagtgcccagtttcattatt |
47023784 |
T |
|
| Q |
99 |
tcagtgctcaaggcactttattttctctcaagggactacttgacagaaagtatcaattctttaagagtgcaaattaactcttaacacgaacaaacctcaa |
198 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47023783 |
tcactgctcaaggcactttattttctctcaagggactacttgacagaaagtatcaattctttaagagtacaaattaactcttaacacgaacaaacctcaa |
47023684 |
T |
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| Q |
199 |
atcgaaccattacaactcacctaaaaaatcgacaaacaacacaacaacaagtagtataat |
258 |
Q |
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||| ||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
47023683 |
atcaaaccattacaactcacccagaaaatcgacagacaacacaacaacaagtagtataat |
47023624 |
T |
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