View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20540_low_2 (Length: 355)
Name: NF20540_low_2
Description: NF20540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20540_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 33863872 - 33864194
Alignment:
| Q |
14 |
aaatcaattaggttagtttgctaccaacttaccaagagacaacaaaaatatgtgaagcctgattgtatcaaaaaataagaaatatgaatgagacattata |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33863872 |
aaatcaattaggttagtttgctaccaacttaccaagagacaacaaaaatatgtgaagactgattgtatcaaaa-ataagaaatatgaatgagacattata |
33863970 |
T |
|
| Q |
114 |
aaaggttgaagatgccaaacagagatattgttggcctgcgaggacgaggccatgtggtgaggtaacttaaaaatgctatagcatttaatacacgtaaact |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33863971 |
aaaggttgaagatgccaaacagagatattgttggcctgcgaggacgaggccatgtggtgaggttacttaaaaatgctatagcatttaatacacgtaaact |
33864070 |
T |
|
| Q |
214 |
atattctatagttgctggaaaatactcatgtgtgatgagtcatgtatagctagctagtaccttcagtccttcatacaactcccctgttaactctaaatca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33864071 |
atattctatagttgctggaaaatactcatgtgtgatgagtcatgtatagctagctagtaccttcagtccttcatacaactcccctgttaactctaaatca |
33864170 |
T |
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| Q |
314 |
tctttatacgtgcaactcccctgt |
337 |
Q |
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|||||||||||||||||||||||| |
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| T |
33864171 |
tctttatacgtgcaactcccctgt |
33864194 |
T |
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