View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20540_low_5 (Length: 246)
Name: NF20540_low_5
Description: NF20540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20540_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 31413045 - 31413223
Alignment:
| Q |
1 |
agagaaagagaagttttgttttgagaaagatttgatcatgtggagcaagatatcatattggtttgatacacacatttaatgcaccattggaatatggaag |
100 |
Q |
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| T |
31413045 |
agagaaagagaagttttgttttgagaaagatatgatcatgtggagcaagatatcatattggtttgatacacacatttaatgcaccattggaatatggaag |
31413144 |
T |
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| Q |
101 |
gggaaaatttgaatttcaaaccaatgtggtgaaccgtgcaagtcaaataagagtaaatgcaattaacccagcattaaca |
179 |
Q |
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| T |
31413145 |
gggaaaatttgaatttcaaaccaatgtggtgaaccgtgcaagtcaaataagagtaaatgcaattaacccagcattaaca |
31413223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 38014642 - 38014510
Alignment:
| Q |
47 |
aagatatcatattggtttgatacacacatttaatgcaccattggaatatggaaggggaaaatttgaatttcaaaccaatgtgg-tgaaccgtgcaagtca |
145 |
Q |
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| T |
38014642 |
aagatatcatattggtttgatacacacatttaatgcgccattggaatatggaagagg-aaatttgaatttcaaaccaatgtggttgaaccgtgcaagtca |
38014544 |
T |
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| Q |
146 |
aataagagtaaatgcaattaacccagcattaaca |
179 |
Q |
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| T |
38014543 |
aataacaataaatgcaatcaacccagcattaaca |
38014510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 2769837 - 2769786
Alignment:
| Q |
11 |
aagttttgttttgagaaagatttgatcatgtggagcaagatatcatattggttt |
64 |
Q |
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| T |
2769837 |
aagttatgttttgaga--gatatgatcatgtggagcaagatatcttattggttt |
2769786 |
T |
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