View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20541_high_10 (Length: 208)
Name: NF20541_high_10
Description: NF20541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20541_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 21019713 - 21019524
Alignment:
| Q |
1 |
taatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21019713 |
taatgactctcaacctccgcttgactggacaatgcggaagaatattgcagtgggatctgccagggggattgcttacttgcattatagttatgaccctcct |
21019614 |
T |
|
| Q |
101 |
aagattattcaccgtgatgtgaaagctgcaaacatatattttttataatagcaaatattattaatgcatccaaaactctcaagaagagaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21019613 |
aagattattcaccgtgatgtgaaagctgcaaacatattttttttttaatagcaaatattattaatgcatccaaaactctcaagaagagaa |
21019524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1435841 - 1435974
Alignment:
| Q |
1 |
taatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcct |
100 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1435841 |
taatggctctcaacctccgcttgagtggccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgac---cct |
1435937 |
T |
|
| Q |
101 |
aagattattcaccgtgatgtgaaagctgcaaacatat |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1435938 |
aagattattcaccgtgatgtgaaagctgcaaatatat |
1435974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1448664 - 1448797
Alignment:
| Q |
1 |
taatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcct |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |||||||||||| || ||| ||||||||||| |||||||||||||| || ||||||| ||| |
|
|
| T |
1448664 |
taatgactctcaaccgccgcttgactggccaatgcggaagaatattgcgctaggagctgccagggggcttgcttacttgcatgatcattgtgac---cct |
1448760 |
T |
|
| Q |
101 |
aagattattcaccgtgatgtgaaagctgcaaacatat |
137 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
1448761 |
aagattattcatcgtgatgtgaaagctgcaaatatat |
1448797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 1441260 - 1441382
Alignment:
| Q |
1 |
taatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcct |
100 |
Q |
| |
|
|||||||||||| || |||||||| ||| |||||| |||||||||||| |||||| ||||||||||| |||||||||||||| || ||||||| ||| |
|
|
| T |
1441260 |
taatgactctcagccgccgcttgagtggccaatgcggaagaatattgcgctgggagctgccagggggcttgcttacttgcatgatcattgtgac---cct |
1441356 |
T |
|
| Q |
101 |
aagattattcaccgtgatgtgaaagc |
126 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
1441357 |
aagattattcatcgtgatgtgaaagc |
1441382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 1429247 - 1429364
Alignment:
| Q |
17 |
ccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcctaagattattcaccgtg |
116 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||||||||||| ||| |||||||||||||| || |||||| |||||||||||||| |||| |
|
|
| T |
1429247 |
ccgcttgagtggccaatgcggaagaatattgcactgggatctgccagagggcttgcttacttgcatgatcactgtgac---cctaagattattcatcgtg |
1429343 |
T |
|
| Q |
117 |
atgtgaaagctgcaaacatat |
137 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
1429344 |
atgtgaaagctgcaaatatat |
1429364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 1455420 - 1455542
Alignment:
| Q |
1 |
taatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcct |
100 |
Q |
| |
|
||||| ||||||||| || ||||| ||| ||||| ||||||||||| |||||| |||||| |||| | |||||||||||| || |||||| |||| |
|
|
| T |
1455420 |
taatgcctctcaaccgccacttgattggccaatgaggaagaatattgggctgggagctgccaaggggctggcttacttgcatgatcattgtga---tcct |
1455516 |
T |
|
| Q |
101 |
aagattattcaccgtgatgtgaaagc |
126 |
Q |
| |
|
||| ||||||| |||||||||||||| |
|
|
| T |
1455517 |
aaggttattcatcgtgatgtgaaagc |
1455542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University