View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20541_high_11 (Length: 205)
Name: NF20541_high_11
Description: NF20541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20541_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 26990956 - 26991125
Alignment:
| Q |
15 |
catagggagcaacaataaggtaaccaatcatgaactacaaagaccaaaacactacatttccacccaaaacctaagatcattagccatatgaattatcttt |
114 |
Q |
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| T |
26990956 |
catagggagcaacaataaggtaaccaatcatgaactacaaagaccaaaacactacatttccacccaaaacctaagatcattagccatatgaattatcttt |
26991055 |
T |
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| Q |
115 |
attctatatcattagtttggctcatcctcaaccggtgtgagactaaccactcacatttgaatacaagata |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991056 |
attctatatcattagtttggctcatcctcaaccggtgtgagactaaccactcacatttgaatacaagata |
26991125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 27005434 - 27005554
Alignment:
| Q |
61 |
aaacactacatttccacccaaaacctaagatcattagccatatgaattatctttattctatatcattagtttggctcatcctcaaccggtgtgagactaa |
160 |
Q |
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|||||| ||||||||||| ||||||| ||| ||||| |||||||||| |||| | ||||||||||||||||| || ||| |||||| |||||||||||| |
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| T |
27005434 |
aaacaccacatttccaccaaaaaccttagagcattacccatatgaatcatctctcttctatatcattagtttagcccattctcaactagtgtgagactaa |
27005533 |
T |
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| Q |
161 |
ccactcacatttgaatacaag |
181 |
Q |
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||||||||||||||||||||| |
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| T |
27005534 |
ccactcacatttgaatacaag |
27005554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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