View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20541_high_2 (Length: 477)

Name: NF20541_high_2
Description: NF20541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20541_high_2
NF20541_high_2
[»] chr1 (5 HSPs)
chr1 (18-227)||(10996651-10996860)
chr1 (141-208)||(35109743-35109811)
chr1 (138-225)||(8281134-8281221)
chr1 (138-216)||(48591013-48591091)
chr1 (138-216)||(48600708-48600786)
[»] chr2 (3 HSPs)
chr2 (284-461)||(42933257-42933434)
chr2 (138-225)||(16388260-16388346)
chr2 (138-225)||(16388672-16388758)
[»] chr6 (3 HSPs)
chr6 (138-225)||(1115299-1115386)
chr6 (139-218)||(98972-99052)
chr6 (138-225)||(31077154-31077239)
[»] chr8 (2 HSPs)
chr8 (140-218)||(8863842-8863920)
chr8 (138-225)||(7493266-7493351)
[»] chr5 (2 HSPs)
chr5 (138-225)||(34842416-34842502)
chr5 (189-225)||(2630087-2630123)
[»] scaffold0076 (1 HSPs)
scaffold0076 (138-209)||(16193-16264)
[»] chr4 (2 HSPs)
chr4 (138-176)||(22660085-22660123)
chr4 (138-172)||(34670946-34670980)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 10996651 - 10996860
Alignment:
Q  18 ttaagtatccaaattaatggattgatcagtttatattnnnnnnnntaaaagtcatttcagatagaaatcatgcaaataatagtgttattagtctctcgat 117  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10996651 ttaagtatccaaattaatggattgatcagtttatattaaaaaaaataaaagtcatttcagatagaaatcatgcaaataatagtgttattagtctctcgat 10996750  T
Q  118 caaacaaactaacaataaccgttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10996751 caaacaaactaacaataaccgttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagta 10996850  T
Q  218 gcctcaaggt 227  Q
    ||||||||||    
T  10996851 gcctcaaggt 10996860  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 35109811 - 35109743
Alignment:
Q  141 gtgaattcgaacaaac-aatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatg 208  Q
    |||||||||||||||  |||||||||||||||||||| || |||| || |||| |||||||||||||||    
T  35109811 gtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatg 35109743  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 8281134 - 8281221
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtagcctcaag 225  Q
    ||||||||||| ||| || ||| | ||||||| |||||| || |||| | ||||| || |||||||||||||||||||||| ||||||    
T  8281134 gttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaag 8281221  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 48591091 - 48591013
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagt 216  Q
    ||||||||||| || ||| ||||||| |||||||||||| || |||  ||||||  || |||||||||||||| |||||    
T  48591091 gttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagt 48591013  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 48600786 - 48600708
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagt 216  Q
    ||||||||||| || ||| ||||||| |||||||||||| || |||  ||||||  || |||||||||||||| |||||    
T  48600786 gttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagt 48600708  T

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Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 284 - 461
Target Start/End: Original strand, 42933257 - 42933434
Alignment:
Q  284 gcttgtgctgcatgtaaatatcaacgtaggaagtgtggtacatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42933257 gcttgtgctgcatgtaaatatcaacgtaggaagtgtggtacatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctc 42933356  T
Q  384 ataaattgtttggtgttggtaaaatcaccaacatgatcaagaatgttccacctcatcttagagatcatactatgagtt 461  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  42933357 ataaattgtttggtgttggtaaaatcaccaatatgatcaagaatgttccacctcatcttagagatcataccatgagtt 42933434  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 16388260 - 16388346
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtagcctcaag 225  Q
    |||||||||||||||||| ||||||||| ||||| |||| || |||  || |||||||||||||||||||||||||||||| ||||||    
T  16388260 gttgtgaattcgaacaaataatcacaccgataaa-cttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaag 16388346  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 16388758 - 16388672
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtagcctcaag 225  Q
    ||||||||||| |||||| ||||||| ||||||| |||| || |||  || ||| | ||||||||||||||| |||||||| ||||||    
T  16388758 gttgtgaattcaaacaaataatcacatcaataaa-cttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaag 16388672  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 1115386 - 1115299
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtagcctcaag 225  Q
    |||||||||| || |||| |||| ||||||||||||||| |||| |  ||||||  ||||||||||||||||  |||||||| |||||    
T  1115386 gttgtgaatttgagcaaataatcgcaccaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagtagcttcaag 1115299  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 98972 - 99052
Alignment:
Q  139 ttgtgaattcgaacaaacaa-tcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtag 218  Q
    |||||||||||| |||| || |||| ||||||||||||| |  |||  ||||||| ||||||||||||||||  |||||||    
T  98972 ttgtgaattcgagcaaataaatcacgccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtag 99052  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 31077239 - 31077154
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtagcctcaag 225  Q
    ||||||||||| ||||||  |||||| |||| ||||  | || |||| || |||| || ||||||||||||| |||||||||||||||    
T  31077239 gttgtgaattccaacaaa--atcacatcaatgaaacgaagatgtgtagagaaaaggaaatagtaatcaatgagtaaagtagcctcaag 31077154  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 8863920 - 8863842
Alignment:
Q  140 tgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtag 218  Q
    |||||||||||||||| |||||||||||||||||||| || |||  |  |||| ||||  |||| ||||||||||||||    
T  8863920 tgtgaattcgaacaaataatcacaccaataaaacttaaatgtgtgaaacaaaggaagtgctaattaatgaataaagtag 8863842  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 7493351 - 7493266
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtagcctcaag 225  Q
    |||||||||||| |||||  |||||||||||||||||   || |||  || |||| |||||||||||||||  |||||||| ||||||    
T  7493351 gttgtgaattcggacaaa--atcacaccaataaaactatgatgtgtggagcaaaggaagtagtaatcaatgtgtaaagtagtctcaag 7493266  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 34842416 - 34842502
Alignment:
Q  138 gttgtgaattcgaacaa-acaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatgaataaagtagcctcaag 225  Q
    |||||||||| |||||| | ||||||||||||||| |||| || |||  ||||||| ||||||||||||| || |||||||||||||||    
T  34842416 gttgtgaattagaacaataaaatcacaccaataaa-cttagatgtgtggagtaaaggaagtagtaatcaa-gagtaaagtagcctcaag 34842502  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 2630087 - 2630123
Alignment:
Q  189 aaagaaagtagtaatcaatgaataaagtagcctcaag 225  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  2630087 aaaggaagtagtaagcaatgaataaagtagcctcaag 2630123  T

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Target: scaffold0076 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 16264 - 16193
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtatagtaaagaaagtagtaatcaatga 209  Q
    |||||||||| |||| || ||| |||||||||||||||| || |||  || |||| ||||||||||||||||    
T  16264 gttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatga 16193  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 22660123 - 22660085
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaactta 176  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  22660123 gttgtgaattcgaacaaataatcacaccaatgaaactta 22660085  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 34670980 - 34670946
Alignment:
Q  138 gttgtgaattcgaacaaacaatcacaccaataaaa 172  Q
    |||||||||||||||||| ||||||||||||||||    
T  34670980 gttgtgaattcgaacaaataatcacaccaataaaa 34670946  T

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