View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20541_high_4 (Length: 359)
Name: NF20541_high_4
Description: NF20541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20541_high_4 |
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| [»] scaffold0141 (2 HSPs) |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 200 - 352
Target Start/End: Complemental strand, 31538 - 31386
Alignment:
| Q |
200 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgacgatattaggtgttgttgttagtgtggtatggtgatgagaagatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31538 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgatgatattaggtgttgttgttagtgtggtatagtgatgagaagatg |
31439 |
T |
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| Q |
300 |
atgataatagtgatgagatgagaagttttgatgttaaatttatattttcttgg |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31438 |
atgataatagtgatgagatgagaagttttgatgttaaatttatatttttttgg |
31386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 200 - 347
Target Start/End: Original strand, 34894 - 35041
Alignment:
| Q |
200 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgacgatattaggtgttgttgttagtgtggtatggtgatgagaagatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34894 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgatgatattaggtgttgttgttagtgtggtatagtgatgagaagatg |
34993 |
T |
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| Q |
300 |
atgataatagtgatgagatgagaagttttgatgttaaatttatatttt |
347 |
Q |
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| T |
34994 |
atgataatagtgatgagatgagaagttttgatgttaaatttatatttt |
35041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 200 - 352
Target Start/End: Original strand, 83274 - 83426
Alignment:
| Q |
200 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgacgatattaggtgttgttgttagtgtggtatggtgatgagaagatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
83274 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgatgatattaggtgttgttgttagtgtggtatagtgatgagaagatg |
83373 |
T |
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| Q |
300 |
atgataatagtgatgagatgagaagttttgatgttaaatttatattttcttgg |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
83374 |
atgataatagtgatgagatgagaagttttgatgttaaatttatatttttttgg |
83426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 200 - 347
Target Start/End: Complemental strand, 79918 - 79771
Alignment:
| Q |
200 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgacgatattaggtgttgttgttagtgtggtatggtgatgagaagatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
79918 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgatgatattaggtgttgttgttagtgtggtatagtgatgagaagatg |
79819 |
T |
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| Q |
300 |
atgataatagtgatgagatgagaagttttgatgttaaatttatatttt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
79818 |
atgataatagtgatgagatgagaagttttgatgttaaatttatatttt |
79771 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 39350265 - 39350409
Alignment:
| Q |
200 |
taattcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgacgatattaggtgttgttgttagt----gtggtatggtgatgagaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||| | |||||||||| |
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| T |
39350265 |
taattcggttttgaaggaaatggttttgaggagttttaaagatttatgggtatgatgatattaagtgttgttgttagtggtagtggtttagtgatgagaa |
39350364 |
T |
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| Q |
296 |
gatgatgataatagtgatgagatgagaagttttgatgttaaattt |
340 |
Q |
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| T |
39350365 |
gatgatgataatagtgatgagatgagaagttttgatgttaaattt |
39350409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 202 - 347
Target Start/End: Original strand, 54354053 - 54354201
Alignment:
| Q |
202 |
attcggttttgaaggaaatggttttgaggagtttcaaagatttatgggtatgacgatattaggtgttgttgttagtg----tggtatggtgatgagaaga |
297 |
Q |
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||||| |||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||| |
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| T |
54354053 |
attcgattttgaaggaaatg-tttcgaggagttttaaagatttatgggtatgatgatattaggtgttgttgttagtggtagtggtttagtgatgagaaga |
54354151 |
T |
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| Q |
298 |
tgatgataatagtgatgagatgagaagttttgatgttaaatttatatttt |
347 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54354152 |
tgatgataatggtgatgagatgagaagttttgatgttaaatttatatttt |
54354201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 3603909 - 3603876
Alignment:
| Q |
238 |
aagatttatgggtatgacgatattaggtgttgtt |
271 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
3603909 |
aagatttatgggtatgatgatattaggtgttgtt |
3603876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 6958917 - 6958880
Alignment:
| Q |
238 |
aagatttatgggtatgacgatattaggtgttgttgtta |
275 |
Q |
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||||||||||||||||| |||||||||| ||||||||| |
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| T |
6958917 |
aagatttatgggtatgatgatattaggttttgttgtta |
6958880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 6241629 - 6241596
Alignment:
| Q |
238 |
aagatttatgggtatgacgatattaggtgttgtt |
271 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
6241629 |
aagatttatgggtatgatgatattaggtgttgtt |
6241596 |
T |
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