View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20541_high_7 (Length: 283)
Name: NF20541_high_7
Description: NF20541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20541_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 5950078 - 5950334
Alignment:
| Q |
11 |
caaaggggtttactagaagaaattgtggaattgattcctaataagagaggtgtcacatcctctaagcatctccttcggttgctccgaaccgcaatgatat |
110 |
Q |
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| T |
5950078 |
caaaggggtttactagaagaaattgtggagttgattcctaataagagaggtgtcacatcctctaagcatctccttcggttgctccgaaccgcaatgatat |
5950177 |
T |
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| Q |
111 |
tacgtgcaagtccatcatgcaaagagaatttagagaaaagggtaggagctcaactagatcaggcttcacttgtggatcttctcattccaaatatgggata |
210 |
Q |
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| T |
5950178 |
tacgtgcaagtccatcatgcaaagagaatttagagaaaagggtaggagctcaactagatcaggcttcacttgtggatcttctcattccaaatatgggata |
5950277 |
T |
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| Q |
211 |
ctcggtcgagacgctttatgatatagattgtattcagaggattctggaccattttat |
267 |
Q |
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| T |
5950278 |
ctcggtcgagacgctttatgatatagattgtattcagaggattctggaccattttat |
5950334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 28320886 - 28320645
Alignment:
| Q |
26 |
gaagaaattgtggaattgattcctaataagagaggtgtcacatcctctaagcatctccttcggttgctccgaaccgcaatgatattacgtgcaagtccat |
125 |
Q |
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||||||||||| | |||||||||||||| | | |||| | | |||||| |||| ||| ||||||| |||| || |||||||||| ||||||| ||| |
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| T |
28320886 |
gaagaaattgtagggttgattcctaataaaaaaagtgtaatcccttctaagtatcttcttaggttgctaagaacagctatgatattacatgcaagttcat |
28320787 |
T |
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| Q |
126 |
catgcaaagagaatttagagaaaagggtaggagctcaactagatcaggcttcacttgtggatcttctcattccaaatatgggatactcggtcgagacgct |
225 |
Q |
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| T |
28320786 |
catgcatagaaaatttggagaaaagggttggttcacagcttgatgaagttgaacttgtggatattttgataccaaatatgggatattcagttgagacact |
28320687 |
T |
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| Q |
226 |
ttatgatatagattgtattcagaggattctggaccattttat |
267 |
Q |
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| T |
28320686 |
ttatgatatagattgtattcaaagaattattgatcattttat |
28320645 |
T |
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