View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20541_high_9 (Length: 248)
Name: NF20541_high_9
Description: NF20541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20541_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 26990680 - 26990438
Alignment:
| Q |
1 |
agagcaaccacacaagtgggactttgaactcacacttgacacatcaacaaacctgtatactcccagcaatgacagaagcagaggccaatatttaaagcaa |
100 |
Q |
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| T |
26990680 |
agagcaaccacacaagtgggactttgaactcacacttgacacatcaacaaacctgtatacacccaacaatgacaaaagcagaggccaatatttaaagcaa |
26990581 |
T |
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| Q |
101 |
tgcatgattaggtgcatgtattcttacaatgaaattctgtatacac-cagaagaccagtaaattttttggcattattgttatgtattcacatccatgact |
199 |
Q |
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| T |
26990580 |
tgcatgattaggtgcatgtattcttacaatgaaattctgtatacacgcagaagaccagtaaattttttggcattattgttatgtattcacatccatgact |
26990481 |
T |
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| Q |
200 |
ttatgcacacataacttttaggatttattgcaccgcctttgct |
242 |
Q |
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| T |
26990480 |
ttatgcacacataacttttaggatttattgcaccgcctttgct |
26990438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 27005206 - 27004980
Alignment:
| Q |
20 |
gactttgaactcacacttgacacatcaacaaacctgtatactcccagcaatgacagaagcagaggccaatatttaaagcaatgcatgattagg----tgc |
115 |
Q |
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| T |
27005206 |
gactttgaattcacacttaacacacgaacagacctatatacacccaacaatgacagaagcggaggataatatctgaagcaatgtatgagtaggagggtgc |
27005107 |
T |
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| Q |
116 |
atgtattcttacaatgaaattctgtatacac-cagaagaccagtaaatt-ttttggcattatt-gttatgtattcacatccatgactttatgcacacata |
212 |
Q |
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| T |
27005106 |
acgtactcttactatgaaattgtgtatacacacagaagaccagtaaactattttggtgttatttgttatgtat-cacatccatgactttatgcgcacaga |
27005008 |
T |
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| Q |
213 |
acttttaggatttattgcaccgcctttg |
240 |
Q |
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| T |
27005007 |
acttttaggatttattgcactgcctttg |
27004980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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