View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20541_low_4 (Length: 452)
Name: NF20541_low_4
Description: NF20541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20541_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 218 - 438
Target Start/End: Complemental strand, 1751074 - 1750854
Alignment:
| Q |
218 |
acaatcatgttcattgttcataagctgagagaagaaaagaaaaatccctaggaaaataagggtttggcaagcttttaattgataatgagtatgcgtggtg |
317 |
Q |
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| T |
1751074 |
acaatcatgttcattgttcataagctgagagaagaaaagaaaaatccctaggaaaataagggtttggcaagcttttaattgataatgagtatgcgtggtg |
1750975 |
T |
|
| Q |
318 |
ggtttgctttatatgttcaattatttaaatgaatttatctttcatctaccgtccaaacgattatgagaagagctatgctattcacatttaaagaaaatgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1750974 |
cgtttgctttatatgttcaattatttaaatgaatttatctttcatctacagtccaaacgattatgagaagagctatgctattcacattgaaagaaaatgt |
1750875 |
T |
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| Q |
418 |
cccaaaagtatcaagaataat |
438 |
Q |
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||||||||||||||||||||| |
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| T |
1750874 |
cccaaaagtatcaagaataat |
1750854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 1756130 - 1755931
Alignment:
| Q |
19 |
cacgactaaattgaggataagttcaaacttaaatcaattatttaggggtctatttgatttccaatttggtttctacttgccatcaaagtccacaaaagag |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1756130 |
cacgactaaattgaggataagttcaaacttaaataaattatttaggggtctatttgatttccaatttggtttctacttgccatcaaagtccacaaaagag |
1756031 |
T |
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| Q |
119 |
gcactattatttgtttctagagataattagttatagctatagactttttgttc-agagtctttttctggaggagaatacaacaaaatgttaaaattgaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1756030 |
gcactattatttgtttctagagataattagttatagctatagactttttgttcaaaagtctttttctggaggagaatacaacaaaatgttaaaattgaat |
1755931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 19661331 - 19661286
Alignment:
| Q |
393 |
tgctattcacatttaaagaaaatgtcccaaaagtatcaagaataat |
438 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19661331 |
tgctattcacagcgaaagaaaatgtcccaaaagtatcaagaataat |
19661286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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