View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20543_high_1 (Length: 303)
Name: NF20543_high_1
Description: NF20543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20543_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 35857127 - 35856839
Alignment:
| Q |
5 |
ttttattttcgacatagagaagataatactcataagatgacgagcaaacgtaccacacaaagacaaatacacacaaaacacaacttaagttgcactaaag |
104 |
Q |
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| T |
35857127 |
ttttatttttgacatagagatgataatactcataagatgacgagcaaacgtaccgcacaaagacaaatacacacaaaacacaacttaagttgcactaaag |
35857028 |
T |
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| Q |
105 |
cataaaagaagatagttttaaattgatggatccaaaaccaattcattaacaagtttttgtttgatggacgaattggatggattaatcaatagatgaatat |
204 |
Q |
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| T |
35857027 |
cacaaaagaagatagttttaaattgatggatccaaagccaattcattaacaagtttttgtttgatggacgaattggatggattaatcaatagatgaatat |
35856928 |
T |
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| Q |
205 |
tgatgaatcaaatttccacctctacatgtatttattcaatcgtcatttccacctctacatgtattatttattcagttgtcatttttctt |
293 |
Q |
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| T |
35856927 |
tgatgaatcaaatttccacctctacatgtatttattcaatcgtcatttccacctctgcatgtattatttattcagttggcatttttctt |
35856839 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 5496148 - 5496220
Alignment:
| Q |
116 |
atagttttaaattgatggatccaaaaccaattcattaacaagtttt--tgtttgatggacgaattggatggatt |
187 |
Q |
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| T |
5496148 |
atagtttttaatggatggatc-aaatccaatccattaacaattttttttgtttgatggatgaattggatggatt |
5496220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 11674759 - 11674831
Alignment:
| Q |
116 |
atagttttaaattgatggatccaaaaccaattcattaacaagtttt--tgtttgatggacgaattggatggatt |
187 |
Q |
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| T |
11674759 |
atagtttttaatggatggatc-aaatccaatccattaacaaatttttttgtttgatggatgaattggatggatt |
11674831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 11683038 - 11683110
Alignment:
| Q |
116 |
atagttttaaattgatggatccaaaaccaattcattaacaagtttt--tgtttgatggacgaattggatggatt |
187 |
Q |
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| T |
11683038 |
atagtttttaatggatggatc-aaatccaatccattaacaaatttttttgtttgatggatgaattggatggatt |
11683110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 34279173 - 34279237
Alignment:
| Q |
116 |
atagttttaaattgatggatccaaaaccaattcattaacaagtttttgtttgatggacgaattgga |
181 |
Q |
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| T |
34279173 |
atagttttaaattgatgaatcc-aaatcaatcaattaacaaatttttctttggtggacgaattgga |
34279237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 36874920 - 36874849
Alignment:
| Q |
117 |
tagttttaaattgatggatccaaaaccaattcattaacaa--gtttttgtttgatggacgaattggatggatt |
187 |
Q |
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| T |
36874920 |
tagttttaaatggatggattcaaa-ccaattcattaacaattttttttgtttgatggatggattgggtggatt |
36874849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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