View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20543_high_1_N (Length: 774)
Name: NF20543_high_1_N
Description: NF20543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20543_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 174 - 501
Target Start/End: Original strand, 40188563 - 40188894
Alignment:
| Q |
174 |
acacttggaagtagaagaagttgtgatttgttgggatgatgataaattgtggggtggcttgcattgggttttataatggttaaggttatgaaggagtggt |
273 |
Q |
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| T |
40188563 |
acacttggaagtagaagaagttgtgatttgttgggatgatgataaattgtggggtggcttgcattgggttttataatggttaaggttatgaaggagtggt |
40188662 |
T |
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| Q |
274 |
ttgttccttggaccttaatttttgtgttgggaaaagaaggctaatgaatggggaacaaaattattggctttgctttcagaataccccaacatttacattg |
373 |
Q |
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| T |
40188663 |
ttgttccttggaccttaatttttgtgttgggaaaagaaggctaatgaatggggaacaaaattattggctttgctttcagaataccccaacatttacattg |
40188762 |
T |
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| Q |
374 |
aataactatttgtaatttccaaattgcccagcatgatggtgaaatgacgacggaaaagaggcgg----aaaaaataaaattaatcgataaatttagcgtc |
469 |
Q |
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| T |
40188763 |
aataactatttgtaatttccaaattgcccagcatgatgttgaaatgacgacggaaaagaggcggaaaaaaaaaagaaaattaatcgataaatttagcgtc |
40188862 |
T |
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| Q |
470 |
atttaacgacaaaattagatttgaaacttgca |
501 |
Q |
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| T |
40188863 |
atttaacgacaaaattagagttgaaacttgca |
40188894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 546 - 745
Target Start/End: Original strand, 40188939 - 40189139
Alignment:
| Q |
546 |
agataaagtcctgttgaactttgatacatttaaactaatagttaaacttaaatggttaatgagaatttcttaagatttaattgaccaaatcgaattagat |
645 |
Q |
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| T |
40188939 |
agataaagtcctgctgaactttgatacatttaaactaatagttaaacttaaatggttaatgagagtttattaagattgaattgaccaagttgagttagat |
40189038 |
T |
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| Q |
646 |
ttttggctagaacaattttcgccgtacttttcaa-cttttgttatttgaaaccaaaatttcatgaatcagtccttgtagcttgtgattgtgtaacagatg |
744 |
Q |
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| T |
40189039 |
ttttggctagaacaattttcgcggtacttttcaaccttttgttatttgaaactaaaatttcatgaatcagtccttgtagcttgtgattgtgtaacagatg |
40189138 |
T |
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| Q |
745 |
t |
745 |
Q |
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| T |
40189139 |
t |
40189139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 40188458 - 40188529
Alignment:
| Q |
60 |
gtgctctttcttgagatgtaacaatagtgacaagtgatagagaaatgaggaagaaaccaatgggattgatca |
131 |
Q |
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| T |
40188458 |
gtgctctttcttgagatgtaacaatagtgacaagtgatagagaaattaggaagaaaccaatgggattgatca |
40188529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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