View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20543_high_2 (Length: 693)
Name: NF20543_high_2
Description: NF20543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20543_high_2 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 151 - 693
Target Start/End: Original strand, 41037298 - 41037838
Alignment:
| Q |
151 |
aataattaacaagacatgctctttctatatatgtgtgtgtgtttgacaactaactgtatcctcattcataacttggtatcaaactttacagtaccatggc |
250 |
Q |
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| T |
41037298 |
aataattaacaagacatgctctttctatatatatgtgtgtgtttgacaactaactgtatcctcattcataacttggtatcaaactttacagtaccatggc |
41037397 |
T |
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| Q |
251 |
tttttatcacacaaatcttccaactcatgaacttgttctaggcttgatatacataattttcttcctcttgctagcaacaaatataaactcagtacaagca |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41037398 |
tttttatcacacaaatcttccaactcatgaacttgttctaggcttgatatacacaattttcttcctcttgctagcaacaaatataaactcaggacaagca |
41037497 |
T |
|
| Q |
351 |
ctttccttcaatttcaccaagttcaatcctaatgctcatacatttcctcctggtataaaattccaaggggatgctgaggtattaatcaatggaaccataa |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41037498 |
ctttccttcaatttcaccaagttcaatcctaatgctcatacatttcctcctggtataaaattccaaggggatgctgaggtatcaatcaatggaaccataa |
41037597 |
T |
|
| Q |
451 |
cactaactaagcgtttagaacttcctccagatacaactaaaccaagtacaggtcgtatcttatccagacctttgtcccttgacaatcttggtagctttgt |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037598 |
cactaactaagcgtttagaacttcctccagatacaactaaaccaagtacaggtcgtatcttatccagacctttgtcccttgacaatcttggtagctttgt |
41037697 |
T |
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| Q |
551 |
cacttc-nnnnnnnncgaaatcgcagagaaccccggacatcaactaactgatggattgatcttctttattgcaccacaagacagtattatctacccaccc |
649 |
Q |
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| T |
41037698 |
cacttctttttctttcgaaatcgcagagaaccccggacatcaactaactgatggattgatcttctttattgcaccacaagacactgtgat---tccaccc |
41037794 |
T |
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| Q |
650 |
aactcagaaaatcaatattttggattagttgattcaaagaatgc |
693 |
Q |
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| T |
41037795 |
aattcagaaagtcaatattttggagtagttgattcaaagaatgc |
41037838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 151 - 556
Target Start/End: Original strand, 41043353 - 41043745
Alignment:
| Q |
151 |
aataattaacaagacatgctctttctatatatgtgtgtgtgtttgacaactaactgtatcctcattcataacttggtatcaaactttacagtaccatggc |
250 |
Q |
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|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41043353 |
aataattaacaagagttgctcttcctatatacatgtgtgtgtttgacaactaactgt-------ttcataacttggtatcaaactttacagtaccatggc |
41043445 |
T |
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| Q |
251 |
tttttatcacacaaatcttccaactcatgaacttgttctaggcttgatatacataattttcttcctcttgctagcaacaaatataaactcagtacaagca |
350 |
Q |
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|||||||| |||||||||||||||||| ||||||||| ||||| ||||||||| || |||||| || |||||||||||||||||||||||||||||||| |
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| T |
41043446 |
tttttatcgcacaaatcttccaactcaagaacttgttttaggcatgatatacacaactttctttcttttgctagcaacaaatataaactcagtacaagcc |
41043545 |
T |
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| Q |
351 |
ctttccttcaatttcaccaagttcaatcctaatgctcatacatttcctcctggtataaaattccaaggggatgctgaggtattaatcaatggaaccataa |
450 |
Q |
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||||| |||||||||||||||||| |||| ||||| || || | ||||||| ||||||||||||||||||| |||| ||||||| |||| |
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| T |
41043546 |
ctttcattcaatttcaccaagttccctcctcatgct------gtttctgccggtataaccatccaaggggatgctgaggtgttaagcaatggagtcatag |
41043639 |
T |
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| Q |
451 |
cactaactaagcgtttagaacttcctccagatacaactaaaccaagtacaggtcgtatcttatccagacctttgtcccttgacaatcttggtagctttgt |
550 |
Q |
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|||| ||||||||||||||||| ||||||| |||| | |||||| ||||||||||| ||| || |||| |||||||||| ||||||| |||||||| |
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| T |
41043640 |
cactgactaagcgtttagaactacctccaggtacattaataccaagcacaggtcgtattttaacctcacctctgtcccttgataatcttgctagctttgc |
41043739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 178 - 530
Target Start/End: Original strand, 41065501 - 41065851
Alignment:
| Q |
178 |
tatatgtgtgtgtgtttgacaactaactgtatcctcattcataacttggtatcaaactttacagtaccatggctttttatcacacaaatcttccaactca |
277 |
Q |
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||||| |||||||||| ||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
41065501 |
tatatatgtgtgtgttcgacaacttacaata--ctcactcataacttggtatcaaactttacagtaccatggctttttaccgcacaaatcttccaactca |
41065598 |
T |
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| Q |
278 |
tgaacttgttctaggcttgatatacataattttcttcctcttgctagcaacaaatataaactcagtacaagcactttccttcaatttcaccaagttcaat |
377 |
Q |
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| T |
41065599 |
tgaacttgttttaggcatgatatacacaactttttttcttttgctagcaacaaatataaactcagtacaagccctttccttcaatttcaccaagttcact |
41065698 |
T |
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| Q |
378 |
cctaatgctcatacatttcctcctggtataaaattccaaggggatgctgaggtattaatcaatggaaccataacactaactaagcgtttagaacttcctc |
477 |
Q |
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|||||||||| | ||||| ||||||||| ||||||||||||||| || |||| |||||| ||| |||| ||||||||| | |||||||| |
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| T |
41065699 |
cctaatgctctgatgtttccctctggtataaccttccaaggggatgctcagacgttaaacaatggggtcatcgcactgactaagcgtatcaaacttcctt |
41065798 |
T |
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| Q |
478 |
cagatacaactaaaccaagtacaggtcgtatcttatccagacctttgtccctt |
530 |
Q |
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| T |
41065799 |
atggtacaactataccaagtactggtcgtatcttaaccccacctgtgtccctt |
41065851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 41037179 - 41037273
Alignment:
| Q |
30 |
tatatatctcctcttaaagtgttaactaggtgtgttggtgtctttcaaatattttcctagataaatatttcttatgtggacacatctatacacac |
124 |
Q |
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| T |
41037179 |
tatatatctcctcttaaagtgttaactaggtgtgttggtgtctttcaaatattttcctagataaatatttcttatgtggacacatctatacacac |
41037273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 595 - 687
Target Start/End: Original strand, 41065933 - 41066022
Alignment:
| Q |
595 |
aactgatggattgatcttctttattgcaccacaagacagtattatctacccacccaactcagaaaatcaatattttggattagttgattcaaa |
687 |
Q |
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||||||||| ||| |||||||||||||||||||||||| || || |||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
41065933 |
aactgatggtttggtcttctttattgcaccacaagacactaagatt---ccacccaactcagaaagtcaatatcttggagtagttgattcaaa |
41066022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 41043218 - 41043277
Alignment:
| Q |
44 |
taaagtgttaactaggtgtgttggtgtctttcaaatattttcctagataaatatttctta |
103 |
Q |
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| T |
41043218 |
taaagtgttagcttggtgtgttggtgtctatcaaatattttcttatataaatatttctta |
41043277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 632
Target Start/End: Original strand, 41043785 - 41043822
Alignment:
| Q |
595 |
aactgatggattgatcttctttattgcaccacaagaca |
632 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| |
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| T |
41043785 |
aactgatggagtgatcttttttattgcaccacaagaca |
41043822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 178 - 530
Target Start/End: Complemental strand, 8496633 - 8496283
Alignment:
| Q |
178 |
tatatgtgtgtgtgtttgacaactaactgtatcctcattcataacttggtatcaaactttacagtaccatggctttttatcacacaaatcttccaactca |
277 |
Q |
| |
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||||| |||||||||||| ||||| || || |||| |||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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| T |
8496633 |
tatatatgtgtgtgtttgtcaacttacaata--ctcactcataacttggtatcaaattttacagtaccatggctttttaccgcacaaatcttccaactca |
8496536 |
T |
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| Q |
278 |
tgaacttgttctaggcttgatatacataattttcttcctcttgctagcaacaaatataaactcagtacaagcactttccttcaatttcaccaagttcaat |
377 |
Q |
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| T |
8496535 |
agaacttgttttaggcatgatatacacaactttctttcttttgctagcaacaaatataaactcagtacaagccctttccttcaatttcaccaagttcact |
8496436 |
T |
|
| Q |
378 |
cctaatgctcatacatttcctcctggtataaaattccaaggggatgctgaggtattaatcaatggaaccataacactaactaagcgtttagaacttcctc |
477 |
Q |
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||||||||||| ||||||||| ||||||||| |||||||| |||||| || |||| |||||| ||| |||| ||||||||| | |||||||| |
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| T |
8496435 |
cctaatgctcagacatttccttctggtataaccttccaaggagatgctaagacgttaaacaatggggtcatcgcactgactaagcgtatcaaacttcctt |
8496336 |
T |
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| Q |
478 |
cagatacaactaaaccaagtacaggtcgtatcttatccagacctttgtccctt |
530 |
Q |
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| T |
8496335 |
atggtacaactataccaagtactggtcgtatcttaaccccacctgtgtccctt |
8496283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 687
Target Start/End: Complemental strand, 8496198 - 8496113
Alignment:
| Q |
599 |
gatggattgatcttctttattgcaccacaagacagtattatctacccacccaactcagaaaatcaatattttggattagttgattcaaa |
687 |
Q |
| |
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||||||||| |||||||||||||||||||||||| | | || |||||||||||||||| || | || ||||| ||||||||||||| |
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| T |
8496198 |
gatggattggtcttctttattgcaccacaagacactgtgat---tccacccaactcagaaagtctacatcttggagtagttgattcaaa |
8496113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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