View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20543_high_4 (Length: 367)

Name: NF20543_high_4
Description: NF20543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20543_high_4
NF20543_high_4
[»] chr3 (8 HSPs)
chr3 (25-165)||(21966614-21966753)
chr3 (25-165)||(21989050-21989189)
chr3 (34-165)||(21966963-21967094)
chr3 (34-165)||(21989399-21989530)
chr3 (249-357)||(24047127-24047237)
chr3 (249-357)||(23674851-23674961)
chr3 (249-357)||(23679356-23679466)
chr3 (249-357)||(24051593-24051703)
[»] chr6 (2 HSPs)
chr6 (34-165)||(20487184-20487315)
chr6 (34-165)||(20481688-20481819)
[»] chr8 (3 HSPs)
chr8 (249-357)||(24859182-24859292)
chr8 (39-165)||(24858989-24859115)
chr8 (34-165)||(24860149-24860280)
[»] chr5 (2 HSPs)
chr5 (249-357)||(27205727-27205837)
chr5 (253-357)||(27210192-27210298)
[»] chr4 (2 HSPs)
chr4 (249-357)||(26897314-26897424)
chr4 (249-357)||(26901776-26901886)
[»] chr1 (2 HSPs)
chr1 (249-357)||(26406737-26406847)
chr1 (249-357)||(26411203-26411313)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 21966753 - 21966614
Alignment:
Q  25 catcagcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaa 124  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21966753 catcagcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaa 21966655  T
Q  125 ttaaaggaccaaaatgaaactaaaattaattaagggaccaa 165  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  21966654 ttaaaggaccaaaatgaaactaaaattaattaaaggaccaa 21966614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 21989189 - 21989050
Alignment:
Q  25 catcagcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaa 124  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21989189 catcagcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaa 21989091  T
Q  125 ttaaaggaccaaaatgaaactaaaattaattaagggaccaa 165  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  21989090 ttaaaggaccaaaatgaaactaaaattaattaaaggaccaa 21989050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 21966963 - 21967094
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21966963 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21967062  T
Q  134 caaaatgaaactaaaattaattaagggaccaa 165  Q
    |||||||||||| |||||||||||||||||||    
T  21967063 caaaatgaaacttaaattaattaagggaccaa 21967094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 21989399 - 21989530
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21989399 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21989498  T
Q  134 caaaatgaaactaaaattaattaagggaccaa 165  Q
    |||||||||||| |||||||||||||||||||    
T  21989499 caaaatgaaacttaaattaattaagggaccaa 21989530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 24047127 - 24047237
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  24047127 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 24047226  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  24047227 aacagtataat 24047237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 23674851 - 23674961
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  23674851 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 23674950  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  23674951 aacagtataat 23674961  T

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Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 23679356 - 23679466
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  23679356 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 23679455  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  23679456 aacagtataat 23679466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 24051593 - 24051703
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  24051593 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 24051692  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  24051693 aacagtataat 24051703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 20487184 - 20487315
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  20487184 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggac 20487283  T
Q  134 caaaatgaaactaaaattaattaagggaccaa 165  Q
    |||||||| |||||||||||||||||||||||    
T  20487284 caaaatgagactaaaattaattaagggaccaa 20487315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 20481819 - 20481688
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| | ||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  20481819 ccataagcgccacatcagcaaccatgtgtgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 20481720  T
Q  134 caaaatgaaactaaaattaattaagggaccaa 165  Q
    |||||||| ||||||||||| |||||||||||    
T  20481719 caaaatgagactaaaattaaataagggaccaa 20481688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 24859182 - 24859292
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24859182 aagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 24859281  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  24859282 aacagtataat 24859292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 24859115 - 24858989
Alignment:
Q  39 agcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaa 138  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||| ||| ||| |||| ||| |||||||||||| | |||||||||||||||||||    
T  24859115 agcgccacatcagcgcccatgtgtgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaa 24859016  T
Q  139 tgaaactaaaattaattaagggaccaa 165  Q
    |||| |||||| |||||||||||||||    
T  24859015 tgaacctaaaaataattaagggaccaa 24858989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 24860149 - 24860280
Alignment:
Q  34 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 133  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||  ||||||  ||||||| ||||| ||||||||||||||| | ||||||||||||||    
T  24860149 ccataagcgccacatcagcgaccatatgtgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggac 24860248  T
Q  134 caaaatgaaactaaaattaattaagggaccaa 165  Q
    ||||||||  |||||| |||||||||||||||    
T  24860249 caaaatgagtctaaaaataattaagggaccaa 24860280  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 27205837 - 27205727
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27205837 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 27205738  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  27205737 aacagtataat 27205727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 27210298 - 27210192
Alignment:
Q  253 agtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaaca 350  Q
    |||||| ||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27210298 agtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaata 27210199  T
Q  351 gtataat 357  Q
    |||||||    
T  27210198 gtataat 27210192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 26897424 - 26897314
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26897424 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 26897325  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  26897324 aacagtataat 26897314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 26901886 - 26901776
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26901886 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 26901787  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  26901786 aacagtataat 26901776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 26406737 - 26406847
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  26406737 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 26406836  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  26406837 aacagtataat 26406847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 26411203 - 26411313
Alignment:
Q  249 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 346  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  26411203 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 26411302  T
Q  347 aacagtataat 357  Q
    |||||||||||    
T  26411303 aacagtataat 26411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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