View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20544_low_1 (Length: 234)
Name: NF20544_low_1
Description: NF20544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20544_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 512711 - 512911
Alignment:
| Q |
24 |
ctaagattaatgtgtggagtatgccgtggatccgcaaccttccctctcttaaaccatccacttcattgccgctacaccaagaagaccttacggtaaattc |
123 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
512711 |
ctaagattaatgtgtggagtattccgtggatccgcaaccttccctctctcaaaccatccacttcaccgccgctacaccaagaagaccttacggtaaattc |
512810 |
T |
|
| Q |
124 |
tttgttgagtgccgatttcaactcttgggacactactttggtgcaatctctttttaatgacgcagaagttgttgccattttgtcaactcctctctctgct |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
512811 |
tttgttgagtgccgatttcaactcttgggacactactttggtgcaatctctttttaatgacgcagaagttgttgccattttgtcaactcctctctttgct |
512910 |
T |
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| Q |
224 |
c |
224 |
Q |
| |
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| |
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| T |
512911 |
c |
512911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 46598658 - 46598858
Alignment:
| Q |
24 |
ctaagattaatgtgtggagtatgccgtggatccgcaaccttccctctcttaaaccatccacttcattgccgctacaccaagaagaccttacggtaaattc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
46598658 |
ctaagattaatgtgtggagtatgccgtggatccgcaaccttctctctctcaaaccatccacttcaccgccgctacaccaacacgaccttacggtaaattc |
46598757 |
T |
|
| Q |
124 |
tttgttgagtgccgatttcaactcttgggacactactttggtgcaatctctttttaatgacgcagaagttgttgccattttgtcaactcctctctctgct |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
46598758 |
tttgttgagtgccgatttcaactcttgggacactactttggtgcaatctctttttaatgacgcagaagctgctgccattttgtcaactcctctctttgct |
46598857 |
T |
|
| Q |
224 |
c |
224 |
Q |
| |
|
| |
|
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| T |
46598858 |
c |
46598858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 31801341 - 31801541
Alignment:
| Q |
24 |
ctaagattaatgtgtggagtatgccgtggatccgcaaccttccctctcttaaaccatccacttcattgccgctacaccaagaagaccttacggtaaattc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
31801341 |
ctaagattaatgtgtggagtatgccgtggatccgcaaccttctctctctcaaaccatccacttcaccgccactacaccaagaagacctcacggtaaattc |
31801440 |
T |
|
| Q |
124 |
tttgttgagtgccgatttcaactcttgggacactactttggtgcaatctctttttaatgacgcagaagttgttgccattttgtcaactcctctctctgct |
223 |
Q |
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|||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||| |
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| T |
31801441 |
tttgttgagtgctgacttgaactcttgggacactactttggtgcaatctctttttaatgatgcagaagctgctgccattttgtcaactcctctctttgct |
31801540 |
T |
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| Q |
224 |
c |
224 |
Q |
| |
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| |
|
|
| T |
31801541 |
c |
31801541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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