View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20544_low_3 (Length: 205)

Name: NF20544_low_3
Description: NF20544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20544_low_3
NF20544_low_3
[»] chr4 (11 HSPs)
chr4 (20-120)||(35808712-35808813)
chr4 (19-110)||(37624859-37624951)
chr4 (21-120)||(16958357-16958457)
chr4 (20-120)||(43595000-43595101)
chr4 (19-120)||(25231499-25231601)
chr4 (20-120)||(3121080-3121180)
chr4 (27-111)||(9093582-9093667)
chr4 (27-119)||(24504698-24504791)
chr4 (20-120)||(41621934-41622035)
chr4 (20-112)||(52270494-52270587)
chr4 (21-120)||(31861547-31861646)
[»] chr1 (6 HSPs)
chr1 (21-120)||(36563873-36563973)
chr1 (20-121)||(10040424-10040524)
chr1 (25-71)||(13028990-13029036)
chr1 (22-72)||(21030125-21030175)
chr1 (20-57)||(5892660-5892697)
chr1 (32-111)||(14104303-14104384)
[»] chr2 (5 HSPs)
chr2 (26-120)||(223891-223986)
chr2 (20-120)||(36903984-36904085)
chr2 (30-120)||(41283360-41283450)
chr2 (24-57)||(1758457-1758490)
chr2 (27-71)||(37743705-37743749)
[»] chr7 (11 HSPs)
chr7 (20-120)||(31191394-31191495)
chr7 (76-120)||(8584125-8584169)
chr7 (21-120)||(28514660-28514760)
chr7 (27-110)||(48488420-48488504)
chr7 (19-120)||(28646608-28646710)
chr7 (27-120)||(19086327-19086421)
chr7 (25-120)||(37869718-37869814)
chr7 (22-71)||(1397894-1397943)
chr7 (20-120)||(10624968-10625069)
chr7 (20-120)||(23247723-23247823)
chr7 (24-112)||(25119940-25120029)
[»] chr8 (8 HSPs)
chr8 (27-120)||(38573313-38573407)
chr8 (20-120)||(7642621-7642722)
chr8 (26-108)||(44395682-44395765)
chr8 (20-121)||(13018509-13018611)
chr8 (19-74)||(33015581-33015636)
chr8 (28-120)||(23518221-23518314)
chr8 (27-59)||(13079294-13079326)
chr8 (26-58)||(13177755-13177787)
[»] chr5 (6 HSPs)
chr5 (26-103)||(10284981-10285059)
chr5 (26-112)||(15476917-15477004)
chr5 (20-57)||(39049869-39049906)
chr5 (24-72)||(6633025-6633073)
chr5 (19-51)||(32292208-32292240)
chr5 (76-120)||(34338927-34338971)
[»] chr3 (5 HSPs)
chr3 (19-120)||(45249353-45249455)
chr3 (19-118)||(6488813-6488913)
chr3 (26-120)||(8108234-8108328)
chr3 (24-59)||(26831883-26831918)
chr3 (21-120)||(48993385-48993484)
[»] chr6 (1 HSPs)
chr6 (20-57)||(6100658-6100695)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 35808813 - 35808712
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    |||||||||||||||||||| ||||||||| ||||||| | || ||| ||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||    
T  35808813 taaggacattgtttaagcatctaaaagtagcaacttttgcattgaaaattgtacggttataacttcaactagtgtttgacttatattttcaagatataat 35808714  T
Q  119 tt 120  Q
    ||    
T  35808713 tt 35808712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 37624951 - 37624859
Alignment:
Q  19 ttaaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaa 110  Q
    ||||||||||||||||||||| ||||||||||||||||| | || ||| |||||||| |||||||| ||||||| ||| ||||||||||||||    
T  37624951 ttaaggacattgtttaagcatctaaaagtagtaacttttgcattgaaaattgtacggttataactttaacaagtgtttgacttatattttcaa 37624859  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 16958357 - 16958457
Alignment:
Q  21 aaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataatt 119  Q
    |||| |||||||||||||| ||||||||| ||||||||| ||  || ||| ||| | ||||||||||||||| ||| |||||||||||||||| ||||||    
T  16958357 aagggcattgtttaagcatctaaaagtagcaacttttacattggaaattgcacgtttataacttcaacaagtgtttgacttatattttcaagacataatt 16958456  T
Q  120 t 120  Q
    |    
T  16958457 t 16958457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 43595101 - 43595000
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    |||| ||||||||||||||| ||||||||| |||||||   || ||| |||||||| ||||||||||| |||  ||||||||| |||||||||| |||||    
T  43595101 taagaacattgtttaagcatctaaaagtagcaacttttgtattgaaaattgtacggttataacttcaagaagggtttaacttacattttcaagacataat 43595002  T
Q  119 tt 120  Q
    ||    
T  43595001 tt 43595000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 25231499 - 25231601
Alignment:
Q  19 ttaaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataa 117  Q
    |||||| ||| ||| |||||| ||||| ||| ||||||| | ||  || ||||||||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  25231499 ttaagggcatggttcaagcatctaaaactagcaacttttgcattggaaattgtacggttataacttcaacaaatatttgacttatattttcaagacataa 25231598  T
Q  118 ttt 120  Q
    |||    
T  25231599 ttt 25231601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 3121180 - 3121080
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    ||||| |||||||||||||| |||||||||  |||||  | || ||| ||||||||| ||||||||||||| |  || |||||||||||||||| |||||    
T  3121180 taagggcattgtttaagcatctaaaagtagcgactttg-cattgaaaattgtacggttataacttcaacaaatgattgacttatattttcaagacataat 3121082  T
Q  119 tt 120  Q
    ||    
T  3121081 tt 3121080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 9093582 - 9093667
Alignment:
Q  27 attgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaag 111  Q
    ||||||||||  | |||||||||||| |||| | || ||| ||||||||| ||||||| ||||||| ||| |||||||||||||||    
T  9093582 attgtttaagtctctaaaagtagtaatttttgcattgaaaattgtacggttataacttaaacaagtgtttgacttatattttcaag 9093667  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 24504791 - 24504698
Alignment:
Q  27 attgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataatt 119  Q
    ||||||||||||| ||||| ||  |||||||   |||||| ||||||||| ||||||| || |||||||| || |||||||| |||||||||||    
T  24504791 attgtttaagcatctaaaaatatcaacttttgtattaaaaattgtacggttataactttaataagtatttgacatatattttaaagatataatt 24504698  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 41622035 - 41621934
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacg-gtataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    ||||| |||||||||||||| ||||||||| ||||||||| || ||| |||||||  ||| |||| |||||||  || | || ||||||||||| |||||    
T  41622035 taagggcattgtttaagcatataaaagtagcaacttttacattgaaaattgtacgattatgactttaacaagtgattgatttgtattttcaagacataat 41621936  T
Q  119 tt 120  Q
    ||    
T  41621935 tt 41621934  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 52270587 - 52270494
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacg-gtataacttcaacaagtatttaacttatattttcaaga 112  Q
    ||||| |||||||||||||| ||||| ||| ||||||| | ||  || ||||||| |||| |||  ||||||| ||| ||||||||||||||||    
T  52270587 taagggcattgtttaagcatataaaaatagcaacttttgcattggaaattgtacgagtatgactgtaacaagtgtttgacttatattttcaaga 52270494  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 31861547 - 31861646
Alignment:
Q  21 aaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataatt 119  Q
    |||| |||||||||||||| ||||| ||| ||||||| | ||  || |||| |||| |||| || ||||||| ||| |||||||||||||||| ||||||    
T  31861547 aagggcattgtttaagcatctaaaa-tagcaacttttgcattggaaattgtccggttataattttaacaagtgtttgacttatattttcaagacataatt 31861645  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 36563973 - 36563873
Alignment:
Q  21 aaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataatt 119  Q
    |||| |||||||||||||||||||||||| ||||||||| || ||| |||||||| |||||||| ||||||| ||| |||||||||||||||  ||||||    
T  36563973 aagggcattgtttaagcatttaaaagtagcaacttttacattgaaaattgtacggatataactttaacaagtgtttgacttatattttcaaggcataatt 36563874  T
Q  120 t 120  Q
    |    
T  36563873 t 36563873  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 10040524 - 10040424
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    ||||| |||||||||||||| ||||||||||||||||| | ||  || |||| ||| ||||||||||||||  || | ||||||||||||||||  ||||    
T  10040524 taagggcattgtttaagcatctaaaagtagtaacttttgcattggaaattgtccggttataacttcaacaa--atgttacttatattttcaagacgtaat 10040427  T
Q  119 ttt 121  Q
    |||    
T  10040426 ttt 10040424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 13028990 - 13029036
Alignment:
Q  25 acattgtttaagcatttaaaagtagtaacttttaccttaaaagttgt 71  Q
    |||||||||||| |||||||||||||||||||||| |||||| ||||    
T  13028990 acattgtttaagtatttaaaagtagtaacttttacattaaaaattgt 13029036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 21030125 - 21030175
Alignment:
Q  22 aggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgta 72  Q
    |||||||||||||||||||||| ||| ||||||||||| ||| || |||||    
T  21030125 aggacattgtttaagcatttaatagtggtaacttttactttagaaattgta 21030175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 5892660 - 5892697
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaactttt 57  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  5892660 taagaacattgtttaagcatttaaaaatagtaactttt 5892697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 14104303 - 14104384
Alignment:
Q  32 ttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt---ataacttcaacaagtatttaacttatattttcaag 111  Q
    |||||||| ||||||||| ||||||| | || ||| ||| |||||   ||||||||||||||||||| ||||| |||||||||    
T  14104303 ttaagcatctaaaagtagcaacttttgcattgaaaattgcacggttatataacttcaacaagtatttgactta-attttcaag 14104384  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 223891 - 223986
Alignment:
Q  26 cattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||||||||||| ||||||||| || |||| | || ||| ||||||||| |||||||||| |||| ||| ||||||||||||||| ||||||||    
T  223891 cattgtttaagcatctaaaagtagcaatttttgcattgaaaattgtacggttataacttcaataagtgtttgacttatattttcaaggtataattt 223986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 36904085 - 36903984
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    ||||| |||||||||||||| ||||||||| ||||||| | ||  || |||||||| ||| |||| || |||| ||| |||| ||||||||||| |||||    
T  36904085 taagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttatgactttaataagtgtttgacttgtattttcaagacataat 36903986  T
Q  119 tt 120  Q
    ||    
T  36903985 tt 36903984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 41283450 - 41283360
Alignment:
Q  30 gtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||| ||| |||||||| ||||||||   || ||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| ||||||||    
T  41283450 gtttaaacatctaaaagtattaacttttgtattgaaaattgtacggttataactt-aacaaatatttgacttatattttcaaggtataattt 41283360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 1758457 - 1758490
Alignment:
Q  24 gacattgtttaagcatttaaaagtagtaactttt 57  Q
    |||||||||||||||| |||||||||||||||||    
T  1758457 gacattgtttaagcatctaaaagtagtaactttt 1758490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 37743705 - 37743749
Alignment:
Q  27 attgtttaagcatttaaaagtagtaacttttaccttaaaagttgt 71  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||    
T  37743705 attgcttaagcatttaaaagtaataacttttacattaaaaattgt 37743749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 31191495 - 31191394
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    ||||| |||||||||||||| ||||||||| ||||||||| ||  || ||| |||| |||||||| ||||||| ||| |||||||||||||||  |||||    
T  31191495 taagggcattgtttaagcatctaaaagtagcaacttttacattggaaattgcacggttataactttaacaagtgtttgacttatattttcaaggcataat 31191396  T
Q  119 tt 120  Q
    ||    
T  31191395 tt 31191394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 8584125 - 8584169
Alignment:
Q  76 tataacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  8584125 tataacttcaacaagtgtttaacttatattttcaagatataattt 8584169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 28514760 - 28514660
Alignment:
Q  21 aaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataatt 119  Q
    |||| |||||||||||||| ||||||||| ||||||| | ||  || ||||||||| ||||||| ||||||| ||| |||||||||||||||  ||||||    
T  28514760 aagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttgaacaagtgtttgacttatattttcaaggcataatt 28514661  T
Q  120 t 120  Q
    |    
T  28514660 t 28514660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 48488420 - 48488504
Alignment:
Q  27 attgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaa 110  Q
    ||||||||||||| ||||||||| ||||||| | ||  || ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  48488420 attgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttcaacaagtgtttgacttatattttcaa 48488504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 28646608 - 28646710
Alignment:
Q  19 ttaaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataa 117  Q
    ||||||| ||||||||||||| ||||||||| ||||||||| ||  || |||||||| ||| |||| ||||| | ||| ||||||||||| |||| ||||    
T  28646608 ttaaggatattgtttaagcatataaaagtagcaacttttacattggaaattgtacggttatgactttaacaaatttttgacttatatttttaagacataa 28646707  T
Q  118 ttt 120  Q
    |||    
T  28646708 ttt 28646710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 19086421 - 19086327
Alignment:
Q  27 attgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggta-taacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||||||| || ||||| |||||| |||| | ||  || |||||||||| |||||||||||||| ||| |||||||||||||||  |||||||    
T  19086421 attgtttaagaatctaaaaatagtaatttttgctttggaaattgtacggtaataacttcaacaagtgtttgacttatattttcaaggcataattt 19086327  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 37869718 - 37869814
Alignment:
Q  25 acattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||||||||| || ||||||||| ||||||| | || ||| |||||||| ||| |||| ||||||| ||| ||||||||||| || | |||||||    
T  37869718 acattgtttaagtatataaaagtagcaacttttgcattgaaaattgtacggttatgactttaacaagtgtttgacttatatttttaaaacataattt 37869814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 1397943 - 1397894
Alignment:
Q  22 aggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgt 71  Q
    |||| |||||||||||||||||||||||||| |||||  |||||| ||||    
T  1397943 aggagattgtttaagcatttaaaagtagtaatttttatattaaaaattgt 1397894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 10625069 - 10624968
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    ||||| |||||||| ||||| ||||||||| ||||||| | || ||| ||||||||| || |||  || |||| ||| |||| ||||||||||| |||||    
T  10625069 taagggcattgtttcagcatataaaagtagaaacttttgcattgaaaattgtacggttatgactataataagtgtttgacttgtattttcaagacataat 10624970  T
Q  119 tt 120  Q
    ||    
T  10624969 tt 10624968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 23247723 - 23247823
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    |||||||||||||||| |||  |||| ||| ||||||| | ||  || ||| ||||| ||||||||||||||| ||| |||||||||||||||  |||||    
T  23247723 taaggacattgtttaaacatcaaaaa-tagcaacttttgcattggaaattgaacggttataacttcaacaagtgtttgacttatattttcaaggcataat 23247821  T
Q  119 tt 120  Q
    ||    
T  23247822 tt 23247823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 25119940 - 25120029
Alignment:
Q  24 gacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaaga 112  Q
    |||||||||||||||| ||||||||| ||||||| | ||| || ||||| || |||||||| ||||  ||||| | || |||||||||||    
T  25119940 gacattgtttaagcatataaaagtagcaacttttgcattataaattgtatggttataactttaacatatatttgaattgtattttcaaga 25120029  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 38573407 - 38573313
Alignment:
Q  27 attgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||||||| || ||||||||||||||||| | ||  || ||||||||| ||||||||||||| | ||| |||||||||||||||  |||||||    
T  38573407 attgtttaagtatctaaaagtagtaacttttgcattggaaattgtacggttataacttcaacaaatgtttgacttatattttcaaggcataattt 38573313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 7642722 - 7642621
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggt-ataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    |||| ||||||||||| ||| ||||| ||| ||||||| | ||  || ||||||||| ||||||||||||||| ||| |||||||||||||| | |||||    
T  7642722 taagaacattgtttaaacatctaaaattagcaacttttgcattgtaaattgtacggttataacttcaacaagtgtttgacttatattttcaaaacataat 7642623  T
Q  119 tt 120  Q
    ||    
T  7642622 tt 7642621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 44395765 - 44395682
Alignment:
Q  26 cattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacg-gtataacttcaacaagtatttaacttatattttc 108  Q
    |||||||||| ||||||||||||| ||||||||| ||  || |||||||  |||||||||||||||| ||| ||||||| ||||    
T  44395765 cattgtttaaacatttaaaagtagcaacttttacattggaaattgtacgtttataacttcaacaagtgtttgacttataatttc 44395682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 13018611 - 13018509
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacg-gtataacttcaacaagtatttaacttatattttcaagatataat 118  Q
    ||||| |||||||||||||| ||||||||| ||||||| | ||  || |||||||  ||| |||| ||||| | ||| |||||||||||||||||||| |    
T  13018611 taagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgtacgaatatgactttaacaaatgtttgacttatattttcaagatatatt 13018512  T
Q  119 ttt 121  Q
    |||    
T  13018511 ttt 13018509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 33015581 - 33015636
Alignment:
Q  19 ttaaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacg 74  Q
    |||||| |||||||||||||| ||||||||| ||||||| | || |||||||||||    
T  33015581 ttaagggcattgtttaagcatctaaaagtagcaacttttgcattgaaagttgtacg 33015636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 23518314 - 23518221
Alignment:
Q  28 ttgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggtata-acttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||||||||| ||||| ||||||||||| | || ||| |||||||||  | |||| || || ||||| | ||||||||| ||||||||||||    
T  23518314 ttgtttaagcatctaaaaatagtaacttttgcattgaaaattgtacggttcagactttaataaatatttgatttatatttttaagatataattt 23518221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 13079294 - 13079326
Alignment:
Q  27 attgtttaagcatttaaaagtagtaacttttac 59  Q
    ||||||||||||| |||||||||||||||||||    
T  13079294 attgtttaagcatctaaaagtagtaacttttac 13079326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 13177755 - 13177787
Alignment:
Q  26 cattgtttaagcatttaaaagtagtaactttta 58  Q
    ||||||||||||||| |||||||||||||||||    
T  13177755 cattgtttaagcattcaaaagtagtaactttta 13177787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 10284981 - 10285059
Alignment:
Q  26 cattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttata 103  Q
    |||||||||||||| |||||||||||||||||   ||  || |||||||| |||||||||||||| ||||| |||||||    
T  10284981 cattgtttaagcatctaaaagtagtaacttttgtattggaaattgtacggttataacttcaacaaatatttgacttata 10285059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 15477004 - 15476917
Alignment:
Q  26 cattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacg-gtataacttcaacaagtatttaacttatattttcaaga 112  Q
    |||||||||||||| ||||||||| || ||||   || ||| ||||||| |||| |||| ||||||| ||| ||||||||||||||||    
T  15477004 cattgtttaagcatataaaagtagcaatttttttattgaaaattgtacgagtatgactttaacaagtgtttgacttatattttcaaga 15476917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 39049869 - 39049906
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaactttt 57  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  39049869 taaggacattgtttaagcatataaaagtaggaactttt 39049906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 6633025 - 6633073
Alignment:
Q  24 gacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgta 72  Q
    |||||||||||| |||||||||||||||| |||||  |||||| |||||    
T  6633025 gacattgtttaaacatttaaaagtagtaatttttatattaaaatttgta 6633073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 32292208 - 32292240
Alignment:
Q  19 ttaaggacattgtttaagcatttaaaagtagta 51  Q
    |||||||||||||||||| ||||||||||||||    
T  32292208 ttaaggacattgtttaagtatttaaaagtagta 32292240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 34338971 - 34338927
Alignment:
Q  76 tataacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||||||||||||| ||| |||||||||||||||  |||||||    
T  34338971 tataacttcaacaagtgtttgacttatattttcaaggcataattt 34338927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 45249353 - 45249455
Alignment:
Q  19 ttaaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataa 117  Q
    |||||| |||||||||||||| ||||||||| ||||||| | ||  || |||||||| ||| |||| ||||| | ||| |||| ||||||||||| ||||    
T  45249353 ttaagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgtacggttatgactttaacaaatgtttgacttgtattttcaagacataa 45249452  T
Q  118 ttt 120  Q
    |||    
T  45249453 ttt 45249455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 6488913 - 6488813
Alignment:
Q  19 ttaaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtac-ggtataacttcaacaagtatttaacttatattttcaagatataa 117  Q
    |||||| |||||||||||||||||||||||| ||||||| | || ||| ||||||   ||| |||| ||||||| ||  |||| |||||| |||||||||    
T  6488913 ttaagggcattgtttaagcatttaaaagtagcaacttttgcattgaaaattgtactattatgactttaacaagtgttgtacttgtatttttaagatataa 6488814  T
Q  118 t 118  Q
    |    
T  6488813 t 6488813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 8108328 - 8108234
Alignment:
Q  26 cattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacgg-tataacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||||||||||||| ||||||||  ||||||| | ||  || |||||||| ||||||||||||||||  || |||||||||||||||  |||||||    
T  8108328 cattgtttaagcatctaaaagtaacaacttttgcattggaaattgtacggttataacttcaacaagt-gttgacttatattttcaaggcataattt 8108234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 26831918 - 26831883
Alignment:
Q  24 gacattgtttaagcatttaaaagtagtaacttttac 59  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26831918 gacattgtttaagcatttaaaagtagtaatttttac 26831883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 48993484 - 48993385
Alignment:
Q  21 aaggacattgtttaagcatttaaaagtagtaacttttaccttaaaagttgtacggtataacttcaacaagtatttaacttatattttcaagatataattt 120  Q
    |||| |||||||||||||| ||||||||| ||||||| | ||  || ||||||| | | |||| ||||||  ||| |||| ||||||||||| |||||||    
T  48993484 aagggcattgtttaagcatctaaaagtagcaactttttcattggaaattgtacgttgtgactttaacaagggtttgacttttattttcaagacataattt 48993385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 6100658 - 6100695
Alignment:
Q  20 taaggacattgtttaagcatttaaaagtagtaactttt 57  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  6100658 taaggacattgtttaagcatataaaagtagcaactttt 6100695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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