View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20545_high_2 (Length: 484)
Name: NF20545_high_2
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20545_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 39081666 - 39081183
Alignment:
| Q |
1 |
gtttaattcaaccaaaatctaaaatatctaaactaaaaaagttacatgattaatccaagaaaaagatataaagtgattttcataattaatttaaaaattt |
100 |
Q |
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| T |
39081666 |
gtttaattcaaccaaaatctaaaatatctaaactaaaaaagttacatgattaatccaagaaaaagatataaagtgattttcataattaatttaaaaattt |
39081567 |
T |
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| Q |
101 |
gaaagaagtgagtgtaagagaaagtgtttaaaagagagtgttgttagtaccattgtaaagagtgttattctttttgtttttatataaaaaatagtgtttg |
200 |
Q |
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| T |
39081566 |
gaaagaagtgagtgtaagagaaagtgtttaaaagagagtggtgttagtaatattctaacgagtgttattctttttgtttttatataaaaaatagtgtttg |
39081467 |
T |
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| Q |
201 |
tnnnnnnnnnngatcagtatactgcaaatttaaatacataggaattgcaatttgaaaaatatgaagnnnnnnnngttagcactactctaatatatttaaa |
300 |
Q |
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| T |
39081466 |
aaaaaaaaaaagatcagtatactccaaatttaaatacataggaattgcaatttgaaaaatatgaagaaaaaaaagttagcactactctaatatatttaaa |
39081367 |
T |
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| Q |
301 |
aggacgcgggggataacatacttctgcacttgttggaccactgattcaggatcttcaacatgatgagaagaataaatcaaaactggagcaagaagcaaga |
400 |
Q |
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| T |
39081366 |
aggacgcgggggataacatacttctgcacttgttggaccactgattcaggatcttcaacatgatgagaagaataaatcaaaactggagcaagaagcaaga |
39081267 |
T |
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| Q |
401 |
aatggaacactagtatggtagcaaatgccatattttttggaagaaattttttcttaagtaggaaacttaaagagtagtgacttg |
484 |
Q |
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| T |
39081266 |
aatggaacactagtatggtagcaaatgccatattttttggaagaaattttttcttaagtaggaaacttaaagagtagtgacttg |
39081183 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 25238321 - 25238280
Alignment:
| Q |
106 |
aagtgagtgtaagagaaagtgtttaaaagagagtgttgttag |
147 |
Q |
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| T |
25238321 |
aagtgagtgctagagaaagtgtttaaaagagagtgttgttag |
25238280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 24055968 - 24055929
Alignment:
| Q |
107 |
agtgagtgtaagagaaagtgtttaaaagagagtgttgtta |
146 |
Q |
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| T |
24055968 |
agtgagtgttagagaaagtgttcaaaagagagtgttgtta |
24055929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 26190041 - 26190080
Alignment:
| Q |
107 |
agtgagtgtaagagaaagtgtttaaaagagagtgttgtta |
146 |
Q |
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| T |
26190041 |
agtgagtgttagagaaagtgttcaaaagagagtgttgtta |
26190080 |
T |
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