View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20545_high_4 (Length: 353)
Name: NF20545_high_4
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20545_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 35870075 - 35869753
Alignment:
| Q |
20 |
ggccaaactatcttttgttgaaagtttgtccgatatgaatctctaaacaaagagacttttaacgaaactgannnnnnnnccatatcaagtcatttaatct |
119 |
Q |
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| T |
35870075 |
ggccaaactatcttttgttgaaaatttgtccgatat--atctctaaacaaagagacttttaacgaaactgattttttt-ccatatcaagtcatttaatct |
35869979 |
T |
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| Q |
120 |
taagttgatgaagctcacaaatgcaaccc-tcagcaaattagttaaagaagtaacttagtgatgtaattaaatcagttggctagttcctttttccctctt |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
35869978 |
taagttgatgaagctcacaaatgcaacccctcagcaaattagttaaagaagtaacttagtgatgtaattaaatcagttggtttgttcctttttctctctt |
35869879 |
T |
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| Q |
219 |
ttgtatcccacaagtatataaactgcagagtgtttaatttctcatttcatgcaagtaatcaatagcgtgtaacctcattctctctctgaaat-aattctc |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
35869878 |
ttgtatcccgcaagtatataaactgcagagtgtttaatttctcatttcatgcaagtaatcaatagcgtgtaacctcattctctctctgaaataaatgctc |
35869779 |
T |
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| Q |
318 |
cactaagatttcttcattcgtcaatg |
343 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35869778 |
cactaagatttcttcattcgtcaatg |
35869753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 18814794 - 18814716
Alignment:
| Q |
228 |
acaagtatataaactgcagagtgtttaatttctcatttcatgcaagtaatcaatagcgtgtaacctcattctctctctgaa |
308 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||| | ||| ||||||| |||| |
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| T |
18814794 |
acaagtatataaacagcag--tgtttaatttctcatttcatgcaagtaatcaatggtgtgtatcttcactctctctatgaa |
18814716 |
T |
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