View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20545_high_9 (Length: 277)

Name: NF20545_high_9
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20545_high_9
NF20545_high_9
[»] chr2 (3 HSPs)
chr2 (117-264)||(21427166-21427313)
chr2 (10-124)||(21426979-21427093)
chr2 (21-81)||(29351009-29351069)
[»] scaffold1051 (1 HSPs)
scaffold1051 (176-258)||(1824-1906)
[»] chr4 (3 HSPs)
chr4 (22-79)||(45371487-45371544)
chr4 (23-82)||(48863848-48863907)
chr4 (17-82)||(45365633-45365698)
[»] chr7 (1 HSPs)
chr7 (23-81)||(30130679-30130737)
[»] chr8 (3 HSPs)
chr8 (17-51)||(12195901-12195935)
chr8 (17-51)||(12440329-12440363)
chr8 (20-81)||(4030202-4030263)
[»] chr1 (2 HSPs)
chr1 (17-79)||(24340994-24341056)
chr1 (17-79)||(24353359-24353421)
[»] chr5 (1 HSPs)
chr5 (25-82)||(9120354-9120411)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 117 - 264
Target Start/End: Original strand, 21427166 - 21427313
Alignment:
Q  117 tgaaacatgagtggtgataggcaaaatagtgaaactgcaacatcaaaaatagatttgagagtaaagttgtcaggtgaacatcatcttcaacttatttcat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||    
T  21427166 tgaaacatgagtggtgataggcaaaatagtgaaactgcaacatcaaaaatagatttgagagtaaagttgtcacatgaacatcatcttcaacttattccat 21427265  T
Q  217 catttatgttttatcttttacagtatttaatatgctattgtttgtgtt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21427266 catttatgttttatcttttacagtatttaatatgctattgtttgtgtt 21427313  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 21426979 - 21427093
Alignment:
Q  10 aagaacatggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgacaagtgtggtgataacaaataaaaagaat 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21426979 aagaacgtggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgacaagtgtggtgataacaaataaaaagaat 21427078  T
Q  110 gttattgtgaaacat 124  Q
    |||||||||||||||    
T  21427079 gttattgtgaaacat 21427093  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29351009 - 29351069
Alignment:
Q  21 catgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 81  Q
    |||||| | |||||||||||||||||||||  | | || ||| ||||||||||||||||||    
T  29351009 catgtacagagagtctatgctttcactccccggtgacaatgagcaagcttaagaagatgac 29351069  T

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Target: scaffold1051 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 1906 - 1824
Alignment:
Q  176 agtaaagttgtcaggtgaacatcatcttcaacttatttcatcatttatgttttatcttttacagtatttaatatgctattgtt 258  Q
    |||||||||||||  | ||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  1906 agtaaagttgtcatattaacttcatctttaacttatttcatcatttatgttttatcttttacattattttatatgttattgtt 1824  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 45371544 - 45371487
Alignment:
Q  22 atgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 79  Q
    ||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||    
T  45371544 atgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaagaagatg 45371487  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 48863848 - 48863907
Alignment:
Q  23 tgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 82  Q
    |||||||||||||| |||||||||||||||  | || ||| |||||||||||||||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaagaagatgaca 48863907  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45365698 - 45365633
Alignment:
Q  17 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 82  Q
    |||||||||||||||||||| |||| ||||| ||| | | || ||| |||||||||||||||||||    
T  45365698 tggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgaca 45365633  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 30130737 - 30130679
Alignment:
Q  23 tgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 81  Q
    |||||||||||||| | |||||| |||||||||||| |||| |||||||||||||||||    
T  30130737 tgtatacagagtctcttctttcattccctagcggcactgatgaagcttaagaagatgac 30130679  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 12195901 - 12195935
Alignment:
Q  17 tggccatgtatacagagtctatgctttcactccct 51  Q
    |||||||||||||||||||| ||||||||||||||    
T  12195901 tggccatgtatacagagtctctgctttcactccct 12195935  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 12440329 - 12440363
Alignment:
Q  17 tggccatgtatacagagtctatgctttcactccct 51  Q
    |||||||||||||||||||| ||||||||||||||    
T  12440329 tggccatgtatacagagtctctgctttcactccct 12440363  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 4030263 - 4030202
Alignment:
Q  20 ccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 81  Q
    ||||||| ||||||||| |||||||||||||| |   || ||| ||||||||||||||||||    
T  4030263 ccatgtacacagagtctctgctttcactccctggtaacaatgagcaagcttaagaagatgac 4030202  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 24340994 - 24341056
Alignment:
Q  17 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 79  Q
    |||| |||||||| |||||| |||||||||||||||| | || |||  |||||||||||||||    
T  24340994 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatg 24341056  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 24353359 - 24353421
Alignment:
Q  17 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 79  Q
    |||| |||||||| |||||| |||||||||||||||| | || |||  |||||||||||||||    
T  24353359 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatg 24353421  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 9120354 - 9120411
Alignment:
Q  25 tatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 82  Q
    |||||||||||| |||||||||||||| | | || ||| |||||||||| ||||||||    
T  9120354 tatacagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgaca 9120411  T

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