View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20545_low_1 (Length: 707)

Name: NF20545_low_1
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20545_low_1
NF20545_low_1
[»] chr6 (6 HSPs)
chr6 (217-690)||(10457892-10458369)
chr6 (14-131)||(10458369-10458484)
chr6 (485-662)||(32056524-32056699)
chr6 (480-674)||(6421554-6421740)
chr6 (347-448)||(10428315-10428416)
chr6 (52-156)||(15102458-15102560)
[»] chr4 (14 HSPs)
chr4 (479-637)||(51537270-51537428)
chr4 (351-649)||(46867328-46867624)
chr4 (485-657)||(46868791-46868962)
chr4 (492-653)||(30783443-30783604)
chr4 (479-616)||(20447175-20447309)
chr4 (484-662)||(32838983-32839160)
chr4 (485-583)||(41982690-41982788)
chr4 (479-597)||(53807842-53807960)
chr4 (523-636)||(51537969-51538082)
chr4 (484-596)||(20445859-20445970)
chr4 (480-516)||(976246-976282)
chr4 (364-439)||(46868996-46869071)
chr4 (612-662)||(41982644-41982694)
chr4 (394-446)||(20445785-20445837)
[»] chr5 (14 HSPs)
chr5 (479-681)||(38226107-38226305)
chr5 (484-662)||(19827919-19828097)
chr5 (481-690)||(35891503-35891708)
chr5 (515-690)||(35891838-35892013)
chr5 (484-650)||(19831805-19831971)
chr5 (347-573)||(14575139-14575366)
chr5 (509-636)||(23136808-23136932)
chr5 (480-602)||(14062312-14062434)
chr5 (488-662)||(8588834-8589008)
chr5 (554-690)||(38231733-38231869)
chr5 (484-571)||(6037130-6037217)
chr5 (353-452)||(38231624-38231722)
chr5 (627-687)||(38225280-38225340)
chr5 (522-563)||(38225208-38225249)
[»] scaffold0426 (3 HSPs)
scaffold0426 (484-648)||(3428-3591)
scaffold0426 (347-447)||(4671-4771)
scaffold0426 (494-576)||(4544-4626)
[»] chr8 (7 HSPs)
chr8 (485-653)||(7000658-7000826)
chr8 (479-657)||(7000991-7001168)
chr8 (484-662)||(8085412-8085590)
chr8 (485-662)||(33136779-33136956)
chr8 (479-560)||(1662909-1662989)
chr8 (479-547)||(1745829-1745896)
chr8 (525-598)||(45099964-45100037)
[»] chr2 (7 HSPs)
chr2 (514-653)||(26510973-26511112)
chr2 (484-597)||(26511693-26511806)
chr2 (479-581)||(14815289-14815389)
chr2 (559-650)||(9730594-9730685)
chr2 (118-165)||(29552714-29552761)
chr2 (484-536)||(3834360-3834412)
chr2 (379-423)||(9729803-9729847)
[»] chr3 (15 HSPs)
chr3 (484-615)||(6761822-6761953)
chr3 (558-673)||(9828024-9828139)
chr3 (479-600)||(1724148-1724269)
chr3 (484-662)||(53114274-53114452)
chr3 (484-563)||(6454393-6454472)
chr3 (479-616)||(9829894-9830031)
chr3 (484-601)||(31313439-31313555)
chr3 (479-538)||(1722873-1722932)
chr3 (543-660)||(1723192-1723309)
chr3 (364-417)||(53114516-53114569)
chr3 (58-150)||(4997926-4998018)
chr3 (627-675)||(9829804-9829852)
chr3 (480-519)||(1542131-1542170)
chr3 (485-520)||(9827982-9828017)
chr3 (402-447)||(1542261-1542306)
[»] chr7 (10 HSPs)
chr7 (496-657)||(47304116-47304277)
chr7 (480-666)||(20268269-20268460)
chr7 (485-568)||(30335085-30335168)
chr7 (479-594)||(31544835-31544948)
chr7 (484-662)||(30332335-30332500)
chr7 (382-428)||(20268987-20269033)
chr7 (488-563)||(5987842-5987917)
chr7 (568-634)||(20268843-20268909)
chr7 (492-540)||(2179459-2179507)
chr7 (491-531)||(20268883-20268923)
[»] chr1 (9 HSPs)
chr1 (484-662)||(12657809-12657990)
chr1 (490-635)||(12664049-12664194)
chr1 (484-662)||(12659109-12659283)
chr1 (480-573)||(6395040-6395133)
chr1 (489-601)||(38518080-38518192)
chr1 (485-606)||(6334230-6334351)
chr1 (484-541)||(12664414-12664471)
chr1 (479-564)||(18342012-18342096)
chr1 (573-662)||(49539778-49539866)
[»] scaffold0049 (1 HSPs)
scaffold0049 (484-520)||(63016-63052)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 217 - 690
Target Start/End: Complemental strand, 10458369 - 10457892
Alignment:
Q  217 aaatccgtacaaattggttgatttcttcctcgaatttttcaaaatagccaatagataagtgaattttatggtgatgatgtgtcacgttaagcattgacgt 316  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||  |||||||  ||||| |||||||| ||||||    
T  10458369 aaatccgtacacatcggttgatttcttcctcgaattttacaaaatagccaataggtaagtgaattttacagtgatgacatgtcatgttaagcactgacgt 10458270  T
Q  317 ggatcaagttacgtcgatcaaattaatccatctgtcaagtctcgccattaacagtgatgacatgtcacgttaagcgttgacgtggagtttcaagttagct 416  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  10458269 ggatcaagttacgtcgatcaaattaatccatctgtaaagtctcgccattatcagtgatgacgtgtcacgttaagcgctgacgtggagtttcaagtcagct 10458170  T
Q  417 tcaacgtttacatggacgaatttgatcgaaaaaatttgaatttattttctgacnnnnnnnnn---aaaacgaaagtcattacaaattgttacactgtcaa 513  Q
    || |||| |||||||||||||||||| ||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  10458169 tccacgtgtacatggacgaatttgattgaaaaaatttgaatttattttctgactttttttttgttaaaacgaaagtcattacaaattgttacactgtcaa 10458070  T
Q  514 atcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatg 613  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10458069 atcgatcgttgaattattcattaaaaatgaagttggtccctgaattatgtcactcattatcaaatcgatccctaaattatttatcttatctattaatatg 10457970  T
Q  614 atctctgagactgtcaaataaattttaaaaactaaaagaatgtgttt-aagagagtaaatagtctttttccaacactt 690  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10457969 atctctgagactgtcaaataaatgttaaaaactaaaagaatgtgtttaaagagagtaaatagtctttttccaacactt 10457892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 10458484 - 10458369
Alignment:
Q  14 atcaatagttgagaggatgataattgagagagacatttaatcaataatttaatgatggatgagttttgcaggagggtaaaattgaaatacgatggcaaaa 113  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  10458484 atcaatagttgagaggatgagaattgagaga--catttaatcaataatttaatgatagatgagttttgcaggagggtaaaattgaaatgcgatggcaaaa 10458387  T
Q  114 aatgaagggaaaaataga 131  Q
    ||||||||||||||||||    
T  10458386 aatgaagggaaaaataga 10458369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 485 - 662
Target Start/End: Complemental strand, 32056699 - 32056524
Alignment:
Q  485 aaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatcc 584  Q
    |||||||||||||||||||||| |||||||| ||||  | ||||||||||||||||| ||  || |||||||||||||||||||||||||||||  |||     
T  32056699 aaagtcattacaaattgttacattgtcaaattgatccttaaattattcattaaaaatcaagatgatccctaaattatgtcactcactatcaaattaatct 32056600  T
Q  585 ctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    || |||||||||||||| |||| ||  |||||||||| ||  ||||||||||  ||||||||||||||||||||||||    
T  32056599 ctgaattatttatcttaactatcaaattgatctctgatac--tcaaataaatgctaaaaactaaaagaatgtgtttaa 32056524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 480 - 674
Target Start/End: Original strand, 6421554 - 6421740
Alignment:
Q  480 aaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatc 579  Q
    |||||||||||| |||||| ||| ||| |||||||| ||||  || |||||||||| ||||| || || ||  || ||||||||||||||||||||||||    
T  6421554 aaacgaaagtcactacaaactgtcacattgtcaaattgatccttggattattcattcaaaatcaagttagtgtctgaattatgtcactcactatcaaatc 6421653  T
Q  580 gatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaagagagtaaatag 674  Q
    |||||||||||||||||||||        || ||||| | || | |||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  6421654 gatccctaaattatttatctt--------atttgatcccagatattgtcaaataaaaattaaaaactaaaagaatgtgtttaatagagtaaatag 6421740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 448
Target Start/End: Original strand, 10428315 - 10428416
Alignment:
Q  347 tctgtcaagtctcgccattaacagtgatgacatgtcacgttaagcgttgacgtggagtttcaagttagcttcaacgtttacatggacgaatttgatcgaa 446  Q
    |||||||||||||  | |||| ||||   |||||||||||||| | ||||||||||||||||||| |||||||| ||  ||| |||| |||||||| |||    
T  10428315 tctgtcaagtctcatcgttaatagtgccaacatgtcacgttaaacattgacgtggagtttcaagtcagcttcaaagtgcacagggacaaatttgatagaa 10428414  T
Q  447 aa 448  Q
    ||    
T  10428415 aa 10428416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 15102458 - 15102560
Alignment:
Q  52 aatcaataatttaatgatggatgagttttgcaggagggtaaaattgaaatacgatggcaaaaaatgaagggaaaaatagacaaattgggtattagggtta 151  Q
    ||||||||| ||||||||||| |||||| |  |||||| |||||||||||  | || |||||| | || || |||||||||||||||||||||||||||     
T  15102458 aatcaataacttaatgatggaggagtttagt-ggagggaaaaattgaaatgaggtgacaaaaa-taaaaggtaaaatagacaaattgggtattagggttg 15102555  T
Q  152 ggaaa 156  Q
    |||||    
T  15102556 ggaaa 15102560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 479 - 637
Target Start/End: Original strand, 51537270 - 51537428
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    ||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| || || ||||||  ||||||||||||||||||||||    
T  51537270 aaaacaaaagtcattacaaattgttacactgtcaaatcaatccctgaactattcattaaaaattaagttagtccctggattatgtcactcactatcaaat 51537369  T
Q  579 cgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaatt 637  Q
    ||||| || |||||||||||||||||   ||||| |||||||| ||||| |||||||||    
T  51537370 cgatcacttaattatttatcttatctcccaatataatctctgatactgtgaaataaatt 51537428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 351 - 649
Target Start/End: Original strand, 46867328 - 46867624
Alignment:
Q  351 tcaagtctcgccattaacagtgatgacatgtcacgttaagcgttgacgtggagtttcaagttagcttcaacgtttacatggacgaatttgatcgaaaaaa 450  Q
    |||||||| ||| |||||| || ||| ||||||||||||||| |||||||||||| ||||| |||||| |||| |||| ||||||||||||| ||| ||     
T  46867328 tcaagtcttgccgttaacaatgctgatatgtcacgttaagcgctgacgtggagttccaagtcagcttccacgtgtacagggacgaatttgattgaacaat 46867427  T
Q  451 tttgaatttattttctgacnnnnnnnnnaaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggt 550  Q
    |||    |  |||| | |          |||| |||||| |||| ||||||||||||| |||||||||||  ||||||||||||||||||| || |||||    
T  46867428 tttttgatgtttttttta-ttttttttaaaaatgaaagtaattataaattgttacactatcaaatcgatccttgaattattcattaaaaatcaagttggt 46867526  T
Q  551 ccctaaattatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaa 649  Q
    || ||||||||||||||||||||||||||||||  | |||||||||| |||| ||| ||| |||||  ||| ||| |||||||||| ||||||| ||||    
T  46867527 cc-taaattatgtcactcactatcaaatcgatctatgaattatttattttatttatcaatttgatccttgatactatcaaataaatgttaaaaattaaa 46867624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 485 - 657
Target Start/End: Complemental strand, 46868962 - 46868791
Alignment:
Q  485 aaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatcc 584  Q
    ||||||| |||||||| || ||||||||||||||||  ||||||||||||||||||| || ||||||  | || ||||||||||||| |||||||||||     
T  46868962 aaagtcactacaaattatttcactgtcaaatcgatcattgaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatca 46868863  T
Q  585 ctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtg 657  Q
     | ||||||||||||||||||| ||  ||||||| |  ||||||||||||||  |||| |||||| |||||||    
T  46868862 atgaattatttatcttatctatcaaactgatctcag-cactgtcaaataaatcctaaatactaaacgaatgtg 46868791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 492 - 653
Target Start/End: Original strand, 30783443 - 30783604
Alignment:
Q  492 ttacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaatt 591  Q
    |||||||||||||| || ||||||| |||  | ||||||||  ||||||| || |||||| || ||||| |||||||| ||| |||||||||||| ||||    
T  30783443 ttacaaattgttactctatcaaatcaatccataaattattccataaaaattaagttggtctctgaattacgtcactcaatattaaatcgatccctgaatt 30783542  T
Q  592 atttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaa 653  Q
    |||||||  |||||| ||| |||||  ||| |||||||||||||| ||||||||||||||||    
T  30783543 atttatcaaatctatcaatttgatccatgatactgtcaaataaatgttaaaaactaaaagaa 30783604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 479 - 616
Target Start/End: Complemental strand, 20447309 - 20447175
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    |||| |||||||| |||||||||| ||  |||||||| ||||  ||| ||||||||||||||| || ||||||| | ||||| |||||||||||||||||    
T  20447309 aaaatgaaagtcaatacaaattgtaac--tgtcaaattgatccttgatttattcattaaaaatcaagttggtccatgaatta-gtcactcactatcaaat 20447213  T
Q  579 cgatccctaaattatttatcttatctattaatatgatc 616  Q
     ||||||| ||||||||||||||||||| ||| |||||    
T  20447212 tgatccctgaattatttatcttatctatcaatttgatc 20447175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 484 - 662
Target Start/End: Complemental strand, 32839160 - 32838983
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||||| ||| ||| ||  |||||| | |||| |||||||| |||| |||| | ||    
T  32839160 gaaagtcattacaaattgttacattgtcaagtcgatccctgaattattcactaagaatcaagatggtccttgaattttgtcactccctat-aaattggtc 32839062  T
Q  584 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
     || |||||||||||||| |||| ||  |||||  ||| || |||||||||||  |||||| | |||||||||||||||    
T  32839061 tctgaattatttatcttaactatcaaattgatccatgataccgtcaaataaatgctaaaaattgaaagaatgtgtttaa 32838983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 485 - 583
Target Start/End: Complemental strand, 41982788 - 41982690
Alignment:
Q  485 aaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    |||||||||||||||||||||||| |||||||||||  | ||||||||||||||||| || ||||||| | |||||||| |||||||||||||| ||||    
T  41982788 aaagtcattacaaattgttacactatcaaatcgatctttaaattattcattaaaaatcaagttggtccatgaattatgtaactcactatcaaattgatc 41982690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 479 - 597
Target Start/End: Original strand, 53807842 - 53807960
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    |||| ||||||| |||||||||||||||| | ||||| ||||  | ||||||||||||||||  || ||||||||||||||||||||| |||||||||||    
T  53807842 aaaaggaaagtcgttacaaattgttacaccgacaaattgatccttaaattattcattaaaaaacaagttggtccctaaattatgtcacccactatcaaat 53807941  T
Q  579 cgatccctaaattatttat 597  Q
     ||||||  ||||||||||    
T  53807942 agatcccataattatttat 53807960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 523 - 636
Target Start/End: Complemental strand, 51538082 - 51537969
Alignment:
Q  523 tgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatgatctctgag 622  Q
    |||||||||||||||| ||  | ||||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||| ||| || || || |     
T  51538082 tgaattattcattaaagattgagttggtccctgaattatgtcactcattatcaaatcgatccatgaattatttatcttatctatcaatttggtccctaat 51537983  T
Q  623 actgtcaaataaat 636  Q
    ||||| ||||||||    
T  51537982 actgttaaataaat 51537969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 596
Target Start/End: Original strand, 20445859 - 20445970
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    ||||||||  |||||||||||||| ||||| || ||| |||||||||| ||||||||| ||   ||||||| |||||||||| | ||||||||||| |||    
T  20445859 gaaagtcaacacaaattgttacaccgtcaagtcaatc-ctgaattattgattaaaaatcaagcaggtccctgaattatgtcaatgactatcaaatcaatc 20445957  T
Q  584 cctaaattattta 596  Q
     ||||||||||||    
T  20445958 tctaaattattta 20445970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 516
Target Start/End: Complemental strand, 976282 - 976246
Alignment:
Q  480 aaacgaaagtcattacaaattgttacactgtcaaatc 516  Q
    ||||||||||||||||||||||||||||| |||||||    
T  976282 aaacgaaagtcattacaaattgttacactatcaaatc 976246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 439
Target Start/End: Complemental strand, 46869071 - 46868996
Alignment:
Q  364 ttaacagtgatgacatgtcacgttaagcgttgacgtggagtttcaagttagcttcaacgtttacatggacgaattt 439  Q
    ||||||||| |||||||||||||||||||||||  | ||||| ||||| | |||| | || |||| ||||||||||    
T  46869071 ttaacagtgttgacatgtcacgttaagcgttgagttagagttccaagtcaacttccatgtgtacaaggacgaattt 46868996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 612 - 662
Target Start/End: Complemental strand, 41982694 - 41982644
Alignment:
Q  612 tgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    |||||||||| ||||||||||||||  |||||||||||||||  |||||||    
T  41982694 tgatctctgatactgtcaaataaatgctaaaaactaaaagaacatgtttaa 41982644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 20445785 - 20445837
Alignment:
Q  394 tgacgtggagtttcaagttagcttcaacgtttacatggacgaatttgatcgaa 446  Q
    |||||||||||||||||| |||||| |||| || |  ||||||||||||||||    
T  20445785 tgacgtggagtttcaagtcagcttccacgtgtataatgacgaatttgatcgaa 20445837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 479 - 681
Target Start/End: Complemental strand, 38226305 - 38226107
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    |||| ||||||| || |||||||||||||| ||||||| | | ||||||||||||    |||| |||||||||| | |||||||||||||| |||||||     
T  38226305 aaaatgaaagtcgttgcaaattgttacactatcaaatcaacccctgaattattca----aaatcaaattggtccatgaattatgtcactcattatcaaaa 38226210  T
Q  579 cgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaagagagtaaatagtctt 678  Q
    ||||| | |||||||||||||||||||| ||| |||||  ||| ||| |||||||||| ||||||| ||||| ||||| ||||||||||||| |||||||    
T  38226209 cgatcaccaaattatttatcttatctatcaatctgatccttgatactatcaaataaatgttaaaaattaaaataatgtatttaagagagtaactagtctt 38226110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 484 - 662
Target Start/End: Original strand, 19827919 - 19828097
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||  |||||| | |||||||||||||| ||||||||||||     
T  19827919 gaaagtcattacaaattgttacactgtcaaatcgatccctaaattattcattaaaaatcaagatggtccatgaattatgtcactcaatatcaaatcgatt 19828018  T
Q  584 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    | |||||||||||||||  |||| ||  |||||  |||   ||| || |||||  ||||||||||||||||||||||||    
T  19828019 cttaaattatttatcttgactataaaactgatccatgatgttgttaagtaaatgctaaaaactaaaagaatgtgtttaa 19828097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 481 - 690
Target Start/End: Original strand, 35891503 - 35891708
Alignment:
Q  481 aacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcg 580  Q
    |||||||  ||||||||||||||||||| |||||| ||||  | ||||||||||||||||     ||||||||| |||| | | |||||||||||||| |    
T  35891503 aacgaaaaccattacaaattgttacactatcaaattgatccataaattattcattaaaaag----ttggtccctgaattgtattactcactatcaaattg 35891598  T
Q  581 atccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaagagagtaaatagtctttt 680  Q
    |||| | |||||||||| |||||||| ||| | |||| ||| | |||||||||||| |||||||  ||||||||  |||||||||||||||| || ||||    
T  35891599 atccatgaattatttattttatctatcaatctaatctttgatattgtcaaataaatgttaaaaatcaaaagaatacgtttaagagagtaaattgtttttt 35891698  T
Q  681 tccaacactt 690  Q
    ||||||||||    
T  35891699 tccaacactt 35891708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 515 - 690
Target Start/End: Complemental strand, 35892013 - 35891838
Alignment:
Q  515 tcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatga 614  Q
    |||||| || ||||||||||||||||| || ||||| | | ||||||||||| |||||||||||| |||  | |||||||||||||||| || ||| |||    
T  35892013 tcgatccctaaattattcattaaaaatcaagttggttcttgaattatgtcacccactatcaaatctatctatgaattatttatcttatcaatcaatctga 35891914  T
Q  615 tctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaagagagtaaatagtctttttccaacactt 690  Q
    |||||||  || |||||||||| ||||||||||||||||||||||||||| | ||||||   |||||| |||||||    
T  35891913 tctctgatgctatcaaataaatattaaaaactaaaagaatgtgtttaagataataaataacatttttctaacactt 35891838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 484 - 650
Target Start/End: Complemental strand, 19831971 - 19831805
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    ||||||||||||||||||||||| |||||||| ||||  ||||||||| ||||||||| ||  |||||  | |||||||||| |||||||||||||||||    
T  19831971 gaaagtcattacaaattgttacattgtcaaattgatccttgaattattaattaaaaatcaagatggtctgtgaattatgtcaatcactatcaaatcgatc 19831872  T
Q  584 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaa 650  Q
      | |||||||||||||| | || ||  |||||||||| | ||||||||||||  ||||||||||||    
T  19831871 attgaattatttatcttaacgatcaaactgatctctgatattgtcaaataaatgctaaaaactaaaa 19831805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 347 - 573
Target Start/End: Original strand, 14575139 - 14575366
Alignment:
Q  347 tctgtcaagtctcgccattaacagtgatgacatgtcacgttaagcgttgacgtggagtttcaagttagcttcaacgtttacatggacgaatttgatcgaa 446  Q
    ||||| |||||| ||| |||| |||| |||| |||||||||||||| |||||||||||| ||||| |||||| | || || | |||||||||||||||||    
T  14575139 tctgtaaagtcttgccgttaaaagtggtgacgtgtcacgttaagcgctgacgtggagttccaagtcagcttccatgtgtaaaaggacgaatttgatcgaa 14575238  T
Q  447 aaaatttgaatttattttctgacnnnnnnnnna-aaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaa 545  Q
    ||  ||| ||||| |||| |              ||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||| ||     
T  14575239 aacttttaaattttttttttttggatttttttttaaacgaaagtcattacaaattgttacattgtcaaatcaatccctaaattattcattaaaaatcaag 14575338  T
Q  546 ttggtccctaaattatgtcactcactat 573  Q
    ||||| | | ||||||||||||||||||    
T  14575339 ttggttcatgaattatgtcactcactat 14575366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 509 - 636
Target Start/End: Original strand, 23136808 - 23136932
Alignment:
Q  509 gtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaattatttatcttatctatta 608  Q
    |||||||||||| |||||||||||||||||||| || ||||| | | ||||||||||||||||||||||| |||||||  |||||||||| ||||||| |    
T  23136808 gtcaaatcgatctctgaattattcattaaaaatcaagttggttcatgaattatgtcactcactatcaaattgatccctgtattatttatcgtatctatca 23136907  T
Q  609 atatgatctctgagactgtcaaataaat 636  Q
    || ||||   ||| ||||||||||||||    
T  23136908 atttgat---tgatactgtcaaataaat 23136932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 602
Target Start/End: Original strand, 14062312 - 14062434
Alignment:
Q  480 aaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatc 579  Q
    |||||||||| ||||||||| |||||||||||||||||||| || ||||| ||||| ||||| || ||||||| |||||||||||| ||| |||||||||    
T  14062312 aaacgaaagtaattacaaatcgttacactgtcaaatcgatccctaaattactcattgaaaatcaagttggtccataaattatgtcattcaatatcaaatc 14062411  T
Q  580 gatccctaaattatttatcttat 602  Q
      ||  | |||||||||||||||    
T  14062412 attctatgaattatttatcttat 14062434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 662
Target Start/End: Original strand, 8588834 - 8589008
Alignment:
Q  488 gtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatcccta 587  Q
    ||||||| |||||||||   | |||||||||||  | ||||||| | ||||||| ||  |||||| | ||||||||||||   ||||||||||||||||     
T  8588834 gtcattaaaaattgttatgttttcaaatcgatccttaaattatttactaaaaattaagatggtccttgaattatgtcacttcatatcaaatcgatccctt 8588933  T
Q  588 aattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    ||||||| |||||| |||| ||  |||||  ||| | | ||||||||||| ||||| || |||||||||||||||    
T  8588934 aattattcatcttaactatcaaattgatccttgatagtatcaaataaattctaaaatctgaaagaatgtgtttaa 8589008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 554 - 690
Target Start/End: Original strand, 38231733 - 38231869
Alignment:
Q  554 taaattatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaa 653  Q
    ||||| |||||||||| | |||||| |||| ||||||||||||||||||| || ||| |  ||||| | ||  ||| |||||| ||||||| ||||||||    
T  38231733 taaatcatgtcactcattgtcaaattgatctctaaattatttatcttatc-atcaatctagtctctcataccctcacataaatgttaaaaattaaaagaa 38231831  T
Q  654 tgtgtttaagagagtaaatagtcttt-ttccaacactt 690  Q
    ||||||||||| |||||||||  ||| |||||||||||    
T  38231832 tgtgtttaagacagtaaatagcatttcttccaacactt 38231869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 571
Target Start/End: Original strand, 6037130 - 6037217
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcact 571  Q
    |||||| |||||||||||||| ||||||||||||||   ||||||||||||||||||| || ||  | ||| ||||||||||||||||    
T  6037130 gaaagttattacaaattgttatactgtcaaatcgatttatgaattattcattaaaaatcaagttaattcctgaattatgtcactcact 6037217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 452
Target Start/End: Original strand, 38231624 - 38231722
Alignment:
Q  353 aagtctcgccattaacagtgatgacatgtcacgttaagcgttgacgtggagtttcaagttagcttcaacgtttacatggacgaatttgatcgaaaaaatt 452  Q
    |||||||| | ||||||||| | || |||||||||| |||||||| ||||||||||||| |||||| || | ||||| ||||||||||||| ||||||||    
T  38231624 aagtctcgtcgttaacagtgttaacgtgtcacgttatgcgttgac-tggagtttcaagtcagcttccacatgtacattgacgaatttgatcaaaaaaatt 38231722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 627 - 687
Target Start/End: Original strand, 38225280 - 38225340
Alignment:
Q  627 tcaaataaattttaaaaactaaaagaatgtgtttaagagagtaaatagtctttttccaaca 687  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||   |||||||||||    
T  38225280 tcaaataaatgttaaaaactaaaagaatgtatttaagagagtaaataacatttttccaaca 38225340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 522 - 563
Target Start/End: Original strand, 38225208 - 38225249
Alignment:
Q  522 ctgaattattcattaaaaatgaaattggtccctaaattatgt 563  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  38225208 ctgaattattcattaaaaattaaattggttcctaaattatgt 38225249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 484 - 648
Target Start/End: Original strand, 3428 - 3591
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    |||||||| |||||||||||||| |||||||| |||| |||||||||||||||||||| || ||||| | |||||||||||| |||| | ||||||||||    
T  3428 gaaagtcaatacaaattgttacattgtcaaattgatctctgaattattcattaaaaataaagttggttcttaaattatgtcattcaccaccaaatcgatc 3527  T
Q  584 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaa 648  Q
    |||||||||||| | |||| ||| ||| |||||  ||| ||||||||||||||  ||||||||||    
T  3528 cctaaattattt-ttttatatatcaatttgatcattgatactgtcaaataaatggtaaaaactaa 3591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 447
Target Start/End: Complemental strand, 4771 - 4671
Alignment:
Q  347 tctgtcaagtctcgccattaacagtgatgacatgtcacgttaagcgttgacgtggagtttcaagttagcttcaacgtttacatggacgaatttgatcgaa 446  Q
    |||||||||||||| | |||||| || | || |||||| ||||||| | |||| ||||| ||||| |||||| | || ||||| ||||||||||||||||    
T  4771 tctgtcaagtctcgtcgttaacaatgctaacgtgtcacattaagcgctaacgttgagttccaagtcagcttccatgtgtacatcgacgaatttgatcgaa 4672  T
Q  447 a 447  Q
    |    
T  4671 a 4671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 576
Target Start/End: Complemental strand, 4626 - 4544
Alignment:
Q  494 acaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaa 576  Q
    |||||||||||||||||| ||| |||| ||||  |||||||||||||| || ||| | ||| |||||||| |||||| |||||    
T  4626 acaaattgttacactgtcgaattgatccctgagctattcattaaaaattaagttgattcctgaattatgttactcaccatcaa 4544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 485 - 653
Target Start/End: Original strand, 7000658 - 7000826
Alignment:
Q  485 aaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatcc 584  Q
    |||||||||| |||||| |||| | ||||||| ||| || |||||||| |||||||| || ||||||| | |||||||||||| | |||||||||||||     
T  7000658 aaagtcattataaattggtacattatcaaatcaatctctaaattattccttaaaaatcaagttggtccttgaattatgtcacttaatatcaaatcgatct 7000757  T
Q  585 ctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaa 653  Q
    || ||||||||||| ||||||| ||| |||||||||| || |||||||||||  |||||||||||||||    
T  7000758 ctgaattatttatcatatctatcaatttgatctctgataccgtcaaataaatgctaaaaactaaaagaa 7000826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 479 - 657
Target Start/End: Complemental strand, 7001168 - 7000991
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    |||| |||||||||||||||||||||| |||||||||||||| |  |||||||| |||||||| || | ||||| | |||||||||||||| | ||||||    
T  7001168 aaaatgaaagtcattacaaattgttacgctgtcaaatcgatcacgaaattattccttaaaaatcaagtgggtccatgaattatgtcactcaatttcaaat 7001069  T
Q  579 cgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtg 657  Q
     ||| ||||||||||||||  ||||||| ||| |||||  ||| | |||||||||||| ||||| |||||||| |||||    
T  7001068 ggat-cctaaattatttattatatctatcaatttgatccttgatattgtcaaataaatgttaaacactaaaagcatgtg 7000991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 484 - 662
Target Start/End: Original strand, 8085412 - 8085590
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    ||||| |||||| |||| ||| | | ||||||||||| ||| |||| ||||||||||| ||  |||||| | ||||||||||||||||||||||||||||    
T  8085412 gaaagacattacgaattattatattttcaaatcgatcactggattactcattaaaaatcaagatggtccatgaattatgtcactcactatcaaatcgatc 8085511  T
Q  584 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
      |||||||||||||||| ||||  |  |||| ||||| | ||||||||||||  |||||||  ||| |||||||||||    
T  8085512 attaaattatttatcttaactatcgaactgatatctgatattgtcaaataaatgctaaaaacctaaaaaatgtgtttaa 8085590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 485 - 662
Target Start/End: Original strand, 33136779 - 33136956
Alignment:
Q  485 aaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatcc 584  Q
    ||||||||||||||||||| || ||||||||||||| || ||||||||||| ||||| ||  | |||| | ||||||||||||| ||||||||| ||       
T  33136779 aaagtcattacaaattgttgcaatgtcaaatcgatccctaaattattcattgaaaatcaagatcgtccttgaattatgtcactcgctatcaaattgactt 33136878  T
Q  585 ctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    ||||| |||| || ||| |||| ||  |||||||||| |||  |||||||||  |||||| ||||| ||| |||||||    
T  33136879 ctaaagtattcatgttaactatcaaactgatctctgatactcgcaaataaatgctaaaaattaaaataatatgtttaa 33136956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 479 - 560
Target Start/End: Original strand, 1662909 - 1662989
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaatta 560  Q
    |||||||||||||||| ||| ||||| |||||||||||||||  |||| |||||||||||||| |||||||||||| |||||    
T  1662909 aaaacgaaagtcattataaactgttagactgtcaaatcgatc-atgaactattcattaaaaatcaaattggtccctgaatta 1662989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 1745829 - 1745896
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaatt 547  Q
    |||| ||||||||||| ||||||||| |||||||||||||||  |||| |||||||||||||| |||||    
T  1745829 aaaatgaaagtcattataaattgttagactgtcaaatcgatc-atgaactattcattaaaaattaaatt 1745896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 598
Target Start/End: Complemental strand, 45100037 - 45099964
Alignment:
Q  525 aattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaattatttatc 598  Q
    ||||||||||||||||| || || |||| |||||||||||||   | |||||||| || | |||||||||||||    
T  45100037 aattattcattaaaaattaatttcgtccataaattatgtcacctgccatcaaatcaattcataaattatttatc 45099964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 514 - 653
Target Start/End: Original strand, 26510973 - 26511112
Alignment:
Q  514 atcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatg 613  Q
    ||||||| |||||||||||||||||||| ||  |||||| | |||||||| | |||||||||||||||||||||||||||||||||||  ||||||  ||    
T  26510973 atcgatccctgaattattcattaaaaatcaagatggtccatgaattatgttattcactatcaaatcgatccctaaattatttatcttaattattaaactg 26511072  T
Q  614 atctctgagactgtcaaataaattttaaaaactaaaagaa 653  Q
    |||  |||  |||||||||||||  |||||||||||||||    
T  26511073 atccttgatgctgtcaaataaatactaaaaactaaaagaa 26511112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 484 - 597
Target Start/End: Complemental strand, 26511806 - 26511693
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    |||||||||||||||| | |||| |||||||| |||| | |||||||||||||||||| ||  ||||| || ||||||||||| ||| |||||||| |||    
T  26511806 gaaagtcattacaaatcgctacattgtcaaattgatctccgaattattcattaaaaattaagatggtctctgaattatgtcacccaccatcaaatcaatc 26511707  T
Q  584 cctaaattatttat 597  Q
     || ||||||||||    
T  26511706 tctgaattatttat 26511693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 581
Target Start/End: Original strand, 14815289 - 14815389
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    |||| ||||||  ||||||||||||| | |||||||| ||||  |||||||||||| |||||| ||  ||||  || | |||||||||||||||||||||    
T  14815289 aaaatgaaagttgttacaaattgttatattgtcaaattgatctatgaattattcatgaaaaatcaagatggt--ctgagttatgtcactcactatcaaat 14815386  T
Q  579 cga 581  Q
    |||    
T  14815387 cga 14815389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 650
Target Start/End: Original strand, 9730594 - 9730685
Alignment:
Q  559 tatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaa 650  Q
    ||||||||||||||||||||| ||| ||||||||||||  |||| ||| ||  |||||  ||| | ||||||||||||  ||||| ||||||    
T  9730594 tatgtcactcactatcaaatcaatctctaaattatttaatttatttatcaaattgatccttgatattgtcaaataaatgctaaaacctaaaa 9730685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 29552714 - 29552761
Alignment:
Q  118 aagggaaaaatagacaaattgggtattagggttaggaaagagggtttg 165  Q
    ||||| ||||||||||||||| |||||||||||||| || ||||||||    
T  29552714 aagggtaaaatagacaaattgagtattagggttagggaatagggtttg 29552761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 3834412 - 3834360
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcatta 536  Q
    ||||||| ||| ||||||||||||||| |||||||||  ||||||||| ||||    
T  3834412 gaaagtcgttataaattgttacactgttaaatcgatcaatgaattatttatta 3834360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 9729803 - 9729847
Alignment:
Q  379 tgtcacgttaagcgttgacgtggagtttcaagttagcttcaacgt 423  Q
    ||||||||||| ||||||||||||||| |||||  ||||||||||    
T  9729803 tgtcacgttaaacgttgacgtggagttccaagtctgcttcaacgt 9729847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 484 - 615
Target Start/End: Complemental strand, 6761953 - 6761822
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    ||||||||||||||||||||| || ||||||| |||| || ||||||||||||||||  |||||||||||| |||||||| ||||||| | ||||| |||    
T  6761953 gaaagtcattacaaattgttagacggtcaaattgatccctaaattattcattaaaaaccaaattggtccctgaattatgttactcactgttaaatcaatc 6761854  T
Q  584 cctaaattatttatcttatctattaatatgat 615  Q
    | | ||||||||||||||| ||| ||| ||||    
T  6761853 cttgaattatttatcttatttatcaatctgat 6761822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 558 - 673
Target Start/End: Original strand, 9828024 - 9828139
Alignment:
Q  558 ttatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtg 657  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||| ||  ||||| ||| |||| |  |||| |||||| ||||||||||||| ||| ||    
T  9828024 ttatgtcactcaaaatcaaatcgatccctgaattatttatcttatataacaatataatccctgacaaagtcagataaatgttaaaaactaaaataatatg 9828123  T
Q  658 tttaagagagtaaata 673  Q
    ||||||||||||||||    
T  9828124 tttaagagagtaaata 9828139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 479 - 600
Target Start/End: Complemental strand, 1724269 - 1724148
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    ||||||||||| |||||||||||||||||| ||||||||||  ||| |||||| ||||||||| || |||||| |  || |||||||||| |||| |||     
T  1724269 aaaacgaaagttattacaaattgttacactatcaaatcgatacctggattatttattaaaaatcaagttggtctcagaactatgtcactcgctattaaac 1724170  T
Q  579 cgatccctaaattatttatctt 600  Q
    |||||| | |||||||||||||    
T  1724169 cgatccttgaattatttatctt 1724148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 662
Target Start/End: Complemental strand, 53114452 - 53114274
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    ||||||||||||||||||||| |||||  | | |||| || ||||||||||||||||| ||  |||||| | |||||||||||||||||| |||| ||||    
T  53114452 gaaagtcattacaaattgttatactgtggatttgatccctaaattattcattaaaaatcaagctggtccatgaattatgtcactcactatgaaattgatc 53114353  T
Q  584 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    | || ||||| ||| |||  ||| ||    ||| |||| | |||| | |||||  ||||||||||||||| ||||||||    
T  53114352 cttagattatctattttaattatcaaacaaatccctgatattgtctattaaatgctaaaaactaaaagaacgtgtttaa 53114274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 563
Target Start/End: Original strand, 6454393 - 6454472
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgt 563  Q
    ||||||||||||||||||||| || ||||||| |||| || ||||||||||||||||  ||||||||| || ||||||||    
T  6454393 gaaagtcattacaaattgttagacggtcaaattgatcactaaattattcattaaaaaccaaattggtctctgaattatgt 6454472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 616
Target Start/End: Complemental strand, 9830031 - 9829894
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    |||||||| |||| |||||||| ||| ||| ||||||||||   ||||||||||||||||||| |   |||||  ||||||||| |||||  ||||||||    
T  9830031 aaaacgaatgtcactacaaattattatactatcaaatcgatacttgaattattcattaaaaatcaggctggtctgtaaattatgacactctttatcaaat 9829932  T
Q  579 cgatccctaaattatttatcttatctattaatatgatc 616  Q
    | |||| | ||||||||| ||||| ||| ||| |||||    
T  9829931 caatccttgaattatttaacttatttatcaatttgatc 9829894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 601
Target Start/End: Complemental strand, 31313555 - 31313439
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    |||| |||||| |||||||| || ||||| || ||||  ||||||||||||||||||| ||  || | |||||||||| |||||||| |||||||||||     
T  31313555 gaaattcattaaaaattgttgcattgtcacatggatccttgaattattcattaaaaataaagatgatacctaaattatttcactcaccatcaaatcgat- 31313457  T
Q  584 cctaaattatttatctta 601  Q
    | | ||||||||||||||    
T  31313456 cattaattatttatctta 31313439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 1722873 - 1722932
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaa 538  Q
    ||||||||| |||||||||||||||||||||||||||  ||| || || |||||||||||    
T  1722873 aaaacgaaaatcattacaaattgttacactgtcaaattcatccctaaactattcattaaa 1722932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 660
Target Start/End: Original strand, 1723192 - 1723309
Alignment:
Q  543 aaattggtccctaaattatgtcactcactatcaaatcgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaa 642  Q
    ||||||||||   |||||| ||||| || || |||||||||||| |  |||||||||||| ||| ||  |||||  ||| ||||||||||||||  ||||    
T  1723192 aaattggtcctccaattatatcactaaccattaaatcgatccctgacgtatttatcttatatatcaaattgatccttgatactgtcaaataaatgctaaa 1723291  T
Q  643 aactaaaagaatgtgttt 660  Q
    |||||||| ||| |||||    
T  1723292 aactaaaataatatgttt 1723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 53114569 - 53114516
Alignment:
Q  364 ttaacagtgatgacatgtcacgttaagcgttgacgtggagtttcaagttagctt 417  Q
    ||||||||| |||  |||||| |||||||||||||||||||||||||| |||||    
T  53114569 ttaacagtgttgatgtgtcacattaagcgttgacgtggagtttcaagtcagctt 53114516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 4998018 - 4997926
Alignment:
Q  58 taatttaatgatggatgagttttgcaggagggtaaaattgaaatacgatggcaaaaaatgaagggaaaaatagacaaattgggtattagggtt 150  Q
    ||||||||||||||| ||||||||  |||||  |||||||||||  | |||||| ||||| ||   |||||| ||||||||| ||||||||||    
T  4998018 taatttaatgatggaggagttttgtgggaggacaaaattgaaatgaggtggcaacaaatggagatcaaaataaacaaattggatattagggtt 4997926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 9829852 - 9829804
Alignment:
Q  627 tcaaataaattttaaaaactaaaagaatgtgtttaagagagtaaatagt 675  Q
    |||||||||| ||||| ||||||  ||||||||||||||||||||||||    
T  9829852 tcaaataaatgttaaacactaaagaaatgtgtttaagagagtaaatagt 9829804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 519
Target Start/End: Original strand, 1542131 - 1542170
Alignment:
Q  480 aaacgaaagtcattacaaattgttacactgtcaaatcgat 519  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  1542131 aaacgaaagtcgttacaaattgttacattgtcaaatcgat 1542170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 520
Target Start/End: Original strand, 9827982 - 9828017
Alignment:
Q  485 aaagtcattacaaattgttacactgtcaaatcgatc 520  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9827982 aaagtcattacaaattgatacactgtcaaatcgatc 9828017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 1542306 - 1542261
Alignment:
Q  402 agtttcaagttagcttcaacgtttacatggacgaatttgatcgaaa 447  Q
    |||| ||||| |||||| |||| |||||||||||||||||||||||    
T  1542306 agttccaagtcagcttccacgtgtacatggacgaatttgatcgaaa 1542261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 496 - 657
Target Start/End: Complemental strand, 47304277 - 47304116
Alignment:
Q  496 aaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaattattt 595  Q
    |||||| |||| ||||||||||||| |  ||||||||||||||||| || ||||||| | ||||||| |||||||| |||||||||||| | ||| ||||    
T  47304277 aaattggtacattgtcaaatcgatcccataattattcattaaaaatcaagttggtccttgaattatgccactcactttcaaatcgatccttgaatcattt 47304178  T
Q  596 atcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtg 657  Q
    ||||||| ||| ||| | |||  ||| || |||||||| ||  |||||||||||||||||||    
T  47304177 atcttatatatcaatttaatccttgataccgtcaaatatatcctaaaaactaaaagaatgtg 47304116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 480 - 666
Target Start/End: Original strand, 20268269 - 20268460
Alignment:
Q  480 aaacgaaagtcattacaaattgttacactgtcaaatcgatcgctga-attattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    ||||||||||||||||||||||||||||| |||||| || |  | | ||||||  |||||||| || |||||   | |||||||||||||||||| ||||    
T  20268269 aaacgaaagtcattacaaattgttacactttcaaattga-cattcagattattggttaaaaatcaagttggttaatgaattatgtcactcactattaaat 20268367  T
Q  579 cgatccctaaattatttatc-ttatctattaatatgatc----tctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaagaga 666  Q
    |||||| ||||||||||||| |||||||| ||| |||||      ||| || |||||||| || |||||||||||||||||||||||||||||    
T  20268368 cgatccataaattatttatctttatctatcaatctgatccgtgattgataccgtcaaatacatgttaaaaactaaaagaatgtgtttaagaga 20268460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 568
Target Start/End: Complemental strand, 30335168 - 30335085
Alignment:
Q  485 aaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactc 568  Q
    ||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||| ||  ||||| ||  ||||||||||||    
T  30335168 aaagtcattacaatttgttgcattgtcaaatcgatccctgaattattcattaaaaatcaagatggtctctggattatgtcactc 30335085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 479 - 594
Target Start/End: Original strand, 31544835 - 31544948
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaat 578  Q
    |||| ||||| |||||||||||||||||||||||||| |||| ||| ||||||  || ||| | ||  ||  |||| |||||||||||||| ||||||||    
T  31544835 aaaatgaaagacattacaaattgttacactgtcaaattgatctctgcattatt--tttaaagtcaacctgacccctgaattatgtcactcattatcaaat 31544932  T
Q  579 cgatccctaaattatt 594  Q
    |||||| | |||||||    
T  31544933 cgatccttgaattatt 31544948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 662
Target Start/End: Original strand, 30332335 - 30332500
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatc 583  Q
    |||||||||| |||||||||||| ||||||||| ||  || | ||||||||||||||| ||  |||| ||| |||||||||| ||| | |||||  ||||    
T  30332335 gaaagtcattgcaaattgttacattgtcaaatcaattcctaatttattcattaaaaatcaagatggttcctgaattatgtcattca-tgtcaaaatgatc 30332433  T
Q  584 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
      ||||||||||||||            |||||  ||| |||||||||||||| ||||||||| |||||||||||||||    
T  30332434 tttaaattatttatct------------tgatcattgatactgtcaaataaatgttaaaaactgaaagaatgtgtttaa 30332500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 20269033 - 20268987
Alignment:
Q  382 cacgttaagcgttgacgtggagtttcaagttagcttcaacgtttaca 428  Q
    |||||||||||||||||||||||||||||| |||||| |||| ||||    
T  20269033 cacgttaagcgttgacgtggagtttcaagtcagcttccacgtgtaca 20268987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 563
Target Start/End: Complemental strand, 5987917 - 5987842
Alignment:
Q  488 gtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgt 563  Q
    ||||||||||||||||||| |||||||| ||||  | ||||||| ||||||||| ||  ||| |||| ||||||||    
T  5987917 gtcattacaaattgttacattgtcaaatagatccttaaattattaattaaaaatcaagatggaccctgaattatgt 5987842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 634
Target Start/End: Complemental strand, 20268909 - 20268843
Alignment:
Q  568 cactatcaaatcgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataa 634  Q
    |||| |||||||||||| | ||||||||||||||||||| ||| |||||  ||| | ||||||||||    
T  20268909 cactgtcaaatcgatccttgaattatttatcttatctatcaatttgatccttgatattgtcaaataa 20268843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 492 - 540
Target Start/End: Original strand, 2179459 - 2179507
Alignment:
Q  492 ttacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaa 540  Q
    ||||||||||||||||||| |||| |||| || ||| ||||||||||||    
T  2179459 ttacaaattgttacactgtgaaattgatcactaaatcattcattaaaaa 2179507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 20268923 - 20268883
Alignment:
Q  491 attacaaattgttacactgtcaaatcgatcgctgaattatt 531  Q
    |||||||||||| |||||||||||||||||  |||||||||    
T  20268923 attacaaattgtcacactgtcaaatcgatccttgaattatt 20268883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 484 - 662
Target Start/End: Original strand, 12657809 - 12657990
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattat----gtcactcactatcaaatc 579  Q
    |||||| |||||||||| ||| | ||||||||| ||| ||| ||||||||||||||   | |||| ||| | ||||||    ||||||||||||||||||    
T  12657809 gaaagtaattacaaattattatattgtcaaatcaatccctggattattcattaaaatcaagattg-tccttgaattatatatgtcactcactatcaaatc 12657907  T
Q  580 gatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    ||||||| |||||||||||||| |||| ||  ||||| |||| || |||||||||||  |||||| | |||||||||||||||    
T  12657908 gatccctgaattatttatcttaactatcaaattgatccctgaaacagtcaaataaatcctaaaaaatgaaagaatgtgtttaa 12657990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 490 - 635
Target Start/End: Original strand, 12664049 - 12664194
Alignment:
Q  490 cattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaaa 589  Q
    ||||||| ||||||| | | ||||||| |||  ||||||||||||||||||| ||| |||||| | ||||||||||| |||||| |||| ||||| | ||    
T  12664049 cattacatattgttatattatcaaatcaatccttgaattattcattaaaaattaaaatggtccttgaattatgtcacacactattaaattgatccatgaa 12664148  T
Q  590 ttatttatcttatctattaatatgatctctgagactgtcaaataaa 635  Q
    |||||||||||| |||| ||  ||||   ||| |||||||||||||    
T  12664149 ttatttatcttaactatcaaattgattcttgatactgtcaaataaa 12664194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 662
Target Start/End: Complemental strand, 12659283 - 12659109
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgct--gaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcga 581  Q
    ||||||||||||||||||||||| |||||||| ||||  |   ||||||||| ||||||| ||  |||||| | ||||||||| ||| |||||||||| |    
T  12659283 gaaagtcattacaaattgttacattgtcaaattgatcaataaaaattattcactaaaaatcaagatggtccttgaattatgtctctccctatcaaatcaa 12659184  T
Q  582 tccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    || || |||||||||||||| |||| ||  |||||       || ||||||||||  |||||||| |||||||||||||||    
T  12659183 tctctgaattatttatcttaactatcaaattgatc------cctatcaaataaatgctaaaaactgaaagaatgtgtttaa 12659109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 573
Target Start/End: Original strand, 6395040 - 6395133
Alignment:
Q  480 aaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactat 573  Q
    |||||||||||||||  | |||||||  |||| |||| |||  ||||||||||||||||||| || | ||||||||||| |||| |||||||||    
T  6395040 aaacgaaagtcattatgagttgttaccttgtccaatcaatccatgaattattcattaaaaatcaagtcggtccctaaataatgttactcactat 6395133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 601
Target Start/End: Complemental strand, 38518192 - 38518080
Alignment:
Q  489 tcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatccctaa 588  Q
    |||||||||||||||||| |||||||| |||| || |||||||||||||||   ||  |||||| | ||||||||  | |||| |||||||||||  | |    
T  38518192 tcattacaaattgttacattgtcaaattgatccctaaattattcattaaaacgtaagatggtccttgaattatgtatcacactgtcaaatcgatctatga 38518093  T
Q  589 attatttatctta 601  Q
    ||| |||||||||    
T  38518092 attgtttatctta 38518080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 606
Target Start/End: Complemental strand, 6334351 - 6334230
Alignment:
Q  485 aaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtcactcactatcaaatcgatcc 584  Q
    |||||| ||||||||||||||  | ||||||||||| || ||||||  |||||  || ||  || ||| | |||||||||||||||||| ||||| |||     
T  6334351 aaagtcgttacaaattgttacgttatcaaatcgatctctaaattatctattaatgattaagatgatccttgaattatgtcactcactattaaatcaatca 6334252  T
Q  585 ctaaattatttatcttatctat 606  Q
    || |||||||||| ||| ||||    
T  6334251 cttaattatttattttaactat 6334230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 12664471 - 12664414
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaat 541  Q
    |||| |||||||||||| ||||| ||||| |||||||  |||||||||||||||||||    
T  12664471 gaaattcattacaaattattacattgtcacatcgatccttgaattattcattaaaaat 12664414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 564
Target Start/End: Original strand, 18342012 - 18342096
Alignment:
Q  479 aaaacgaaagtcattacaaattgttacactgtcaaatcgatcgctgaattattcattaaaaatgaaattggtccctaaattatgtc 564  Q
    ||||| ||| ||||||||||||||| |||  |||||| |||| |||||||||| ||||||||| || ||||||||| || ||||||    
T  18342012 aaaacaaaattcattacaaattgtttcaccatcaaattgatccctgaattatt-attaaaaatcaagttggtcccttaaatatgtc 18342096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 662
Target Start/End: Complemental strand, 49539866 - 49539778
Alignment:
Q  573 tcaaatcgatccctaaattatttatcttatctattaatatgatctctgagactgtcaaataaattttaaaaactaaaagaatgtgtttaa 662  Q
    |||||||| ||| | |||||||||| |||||||| ||  |||||||| | ||| ||||||||||   ||||| |||||||||||||||||    
T  49539866 tcaaatcgctccttgaattatttatattatctatcaaactgatctctaatactatcaaataaataa-aaaaattaaaagaatgtgtttaa 49539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 63052 - 63016
Alignment:
Q  484 gaaagtcattacaaattgttacactgtcaaatcgatc 520  Q
    |||||||||||||||||||||||||||||||| ||||    
T  63052 gaaagtcattacaaattgttacactgtcaaattgatc 63016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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