View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20545_low_11 (Length: 277)

Name: NF20545_low_11
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20545_low_11
NF20545_low_11
[»] chr2 (4 HSPs)
chr2 (1-259)||(43457508-43457766)
chr2 (5-177)||(44223197-44223369)
chr2 (5-177)||(44211035-44211207)
chr2 (5-177)||(44234019-44234191)
[»] chr8 (1 HSPs)
chr8 (3-253)||(4501193-4501443)
[»] chr7 (12 HSPs)
chr7 (107-181)||(39366084-39366158)
chr7 (11-123)||(42142254-42142366)
chr7 (98-181)||(39338722-39338805)
chr7 (104-180)||(39589345-39589421)
chr7 (11-181)||(42171845-42172015)
chr7 (113-165)||(39353580-39353632)
chr7 (107-181)||(39547516-39547590)
chr7 (113-165)||(1084868-1084920)
chr7 (11-82)||(42154098-42154169)
chr7 (107-165)||(39538074-39538132)
chr7 (5-82)||(42133151-42133228)
chr7 (98-162)||(39564314-39564378)
[»] chr4 (3 HSPs)
chr4 (2-78)||(2886926-2887002)
chr4 (2-72)||(2897380-2897450)
chr4 (5-181)||(2877162-2877338)
[»] chr1 (2 HSPs)
chr1 (5-82)||(2149002-2149079)
chr1 (5-168)||(2160899-2161062)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 43457766 - 43457508
Alignment:
Q  1 tttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43457766 tttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggc 43457667  T
Q  101 ttccctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtcagagaatctgtgatttact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43457666 ttccctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtcagagaatctgtgatttact 43457567  T
Q  201 cggctttccttaggttacctagagaagtcagtagtgaggaaaaaatggtaagtactcag 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43457566 cggctttccttaggttacctagagaagtcagtagtgaggaaaaaatggtaagtactcag 43457508  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 44223369 - 44223197
Alignment:
Q  5 atgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggcttcc 104  Q
    ||||| || ||||||||||| || |||||| ||||||||||| | ||||| ||||| |||||||| || ||||| |||||  | |   | ||||| | ||    
T  44223369 atgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtacc 44223270  T
Q  105 ctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttac 177  Q
    |||| || |||||||||||||| ||||||||||| ||||| || || |  |||||||||||||| || |||||    
T  44223269 ctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaatgatatccattcaccgcatgttac 44223197  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 44211207 - 44211035
Alignment:
Q  5 atgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggcttcc 104  Q
    ||||| || ||||||||||| || |||||| ||||||||||| | ||||| ||||| |||||||| || ||||| |||||  | |   | ||||| | ||    
T  44211207 atgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtacc 44211108  T
Q  105 ctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttac 177  Q
    |||| || |||||||||||||| ||||| ||||| ||||| ||||| |  ||||| |||||||| || |||||    
T  44211107 ctaaaaagcaagaaacatttgctagaatatctggctactgtgaacagaatgatattcattcacctcatgttac 44211035  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 44234191 - 44234019
Alignment:
Q  5 atgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggcttcc 104  Q
    ||||| || ||||||||||| || |||||| ||||||||||| | ||||| ||||| |||||||| || ||||| |||||  | |   | ||||| |  |    
T  44234191 atgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatc 44234092  T
Q  105 ctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttac 177  Q
    |||| || |||||||||||||| ||||| || || ||||| || || |  |||||||||||||| || |||||    
T  44234091 ctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttac 44234019  T

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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 4501193 - 4501443
Alignment:
Q  3 taatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggctt 102  Q
    |||||||||||||||| || || ||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |     
T  4501193 taatgggagttagtggtgccgggaagacaactttaatggatgttttagcaggaagaaagactggtggctacattgaaggagatgttagaatctctggata 4501292  T
Q  103 ccctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtcagagaatctgtgatttactcg 202  Q
    ||||||||| |||||||| ||||||||| ||||||| || || |||||||| ||||| |||||||| ||||||||| ||||||||||| |||| |||||     
T  4501293 ccctaagaaccaagaaacctttgcaagagtttctggttattgtgaacaaactgatattcattcacctcaagttactatcagagaatctttgatgtactct 4501392  T
Q  203 gctttccttaggttacctagagaagtcagtagtgaggaaaaaatggtaagt 253  Q
    ||||||||| |||| |||| ||||||  ||| ||||||||| || ||||||    
T  4501393 gctttccttcggttgcctaaagaagttggtaatgaggaaaagattgtaagt 4501443  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 39366084 - 39366158
Alignment:
Q  107 aagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtc 181  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || || |||||||||    
T  39366084 aagaagcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttactgtc 39366158  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 42142366 - 42142254
Alignment:
Q  11 gttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggcttccctaaga 110  Q
    |||||||| ||||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||| |||||| || | || || ||||| | ||| ||||    
T  42142366 gttagtggtgctggaaagacaaccctaatggatgtattagctggaagaaagacaggtggatacatcgaaggaaatatcagcatatctggttacccaaaga 42142267  T
Q  111 atcaagaaacatt 123  Q
    | |||||||||||    
T  42142266 accaagaaacatt 42142254  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 39338722 - 39338805
Alignment:
Q  98 ggcttccctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtc 181  Q
    ||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||||||| || || |||||||||    
T  39338722 ggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctcctcatgttactgtc 39338805  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 39589421 - 39589345
Alignment:
Q  104 cctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgt 180  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||  |||||||| || || || ||||||||    
T  39589421 cctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcctcatgttactgt 39589345  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 42172015 - 42171845
Alignment:
Q  11 gttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggcttccctaaga 110  Q
    |||||||| ||||| ||||||||  | |||||||| ||||||||||| || || ||||| |||||||||||| || |||| || || || | ||  ||||    
T  42172015 gttagtggtgctgggaagacaacactcatggatgtattagctggaagaaaaactggtggatacattgaaggaaatattagcatatcaggttaccaaaaga 42171916  T
Q  111 atcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtc 181  Q
    | ||||||||||| ||  |||||  ||| ||||||||||| |  ||||| ||||| || || |||||||||    
T  42171915 accaagaaacattcgcccgaattagtggttactgcgaacagaatgatattcattctcctcatgttactgtc 42171845  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 39353580 - 39353632
Alignment:
Q  113 caagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattc 165  Q
    |||||||| ||||||||||||||||||||||| || ||||| |||||||||||    
T  39353580 caagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattc 39353632  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 39547590 - 39547516
Alignment:
Q  107 aagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtc 181  Q
    ||||| ||||| || |||||||||||||| |||||||| || ||||| ||||||||||| || || |||||||||    
T  39547590 aagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcctcatgttactgtc 39547516  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 1084920 - 1084868
Alignment:
Q  113 caagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattc 165  Q
    |||||||||||| ||||||||||||||||||| || ||||  |||||||||||    
T  1084920 caagaaacatttacaagaatttctggatactgtgagcaaatagatatccattc 1084868  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 42154169 - 42154098
Alignment:
Q  11 gttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaagga 82  Q
    |||||||| ||||||||||||||  | |||||||| ||||| || || || |||||||| ||||||||||||    
T  42154169 gttagtggtgctggaaagacaaccctcatggatgtattagccggcagaaaaacaggtggatacattgaagga 42154098  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 39538132 - 39538074
Alignment:
Q  107 aagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattc 165  Q
    ||||| ||||| || |||||||||||||| |||||||| || ||||| |||||||||||    
T  39538132 aagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattc 39538074  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 42133228 - 42133151
Alignment:
Q  5 atgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaagga 82  Q
    ||||| || ||||| ||||||||||||||  | |||||||| ||||| ||||| || |||||||| || |||||||||    
T  42133228 atgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaagga 42133151  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 39564378 - 39564314
Alignment:
Q  98 ggcttccctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatcca 162  Q
    ||||| || ||||| |||||||| ||||||||||||||||| ||||| || ||||  ||||||||    
T  39564378 ggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatgatatcca 39564314  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 2886926 - 2887002
Alignment:
Q  2 ttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattga 78  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||||| || |||||||| |||||    
T  2886926 ttaatgggagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattga 2887002  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 2897450 - 2897380
Alignment:
Q  2 ttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggtta 72  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || || || ||||||||    
T  2897450 ttaatgggagttagtggagctggtaaaactactttaatggatgttttggctggtagaaaaaccggtggtta 2897380  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 2877162 - 2877338
Alignment:
Q  5 atgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggcttcc 104  Q
    ||||| |||||||||||||| || || |||||||||||||| || ||||| ||||| ||  ||||||| ||||| ||     | | ||| ||||| | ||    
T  2877162 atgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttacc 2877261  T
Q  105 ctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagttactgtc 181  Q
    |||| || |||||||||||||| ||||| ||||| || || || || |  |||||||| || || ||||||||||||    
T  2877262 ctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtc 2877338  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 2149079 - 2149002
Alignment:
Q  5 atgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaagga 82  Q
    ||||| || ||||| ||||||||||| ||||| |||||||||||||||||||  || ||  |||| ||||||||||||    
T  2149079 atgggtgtaagtggtgctggaaagactactttaatggatgttttagctggaataaaaactagtggatacattgaagga 2149002  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 2161062 - 2160899
Alignment:
Q  5 atgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaaggagatgttagaatctctggcttcc 104  Q
    ||||| || ||||| || |||||||| ||| | ||||||||||||||||||||||| || ||||| || ||||| ||| |  | | ||| || ||||  |    
T  2161062 atgggtgtaagtggtgccggaaagactactctaatggatgttttagctggaaggaaaactggtggatatattgatggaaacatcacaatatccggctatc 2160963  T
Q  105 ctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcacc 168  Q
    | ||||||||| ||||||||||  | || || ||||| ||||| |||   ||||||||||||||    
T  2160962 caaagaatcaaaaaacatttgctcgcatatcgggatattgcgagcaatttgatatccattcacc 2160899  T

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