View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20545_low_14 (Length: 259)
Name: NF20545_low_14
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20545_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 36901268 - 36901467
Alignment:
| Q |
60 |
ttgtcaaaaaccaataagaataaagatgtggagtaagtatggacaacaaccagcaactaaacagtctcaagtaacaaaaacaaacataaatttaatctaa |
159 |
Q |
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| T |
36901268 |
ttgtcaaaaaccaataagaataaagatgtggagtaagtatggacaacaaccagcaactaaacagtctcaagtaacaaaaacaaacataaatttaatctaa |
36901367 |
T |
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| Q |
160 |
caatcaagtgtaaatagatctttaatattgttgtttaattagtgtctaaaataatattacaaacctaatggattcaactaactgataaacataaaaggcc |
259 |
Q |
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| T |
36901368 |
caatcaagtgtaaatagatctttaatattgttgtttaattagtgtctaaaataatattacaaacctaatggattctactaactgataaagataaaaggcc |
36901467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36901226 - 36901271
Alignment:
| Q |
1 |
tttttgctactaattgatttactgaaaaattaataaatattgttgt |
46 |
Q |
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| T |
36901226 |
tttttgctactaattgatttactaaaaaattaataaatattgttgt |
36901271 |
T |
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