View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20545_low_16 (Length: 250)

Name: NF20545_low_16
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20545_low_16
NF20545_low_16
[»] chr2 (1 HSPs)
chr2 (1-241)||(21426623-21426864)
[»] chr7 (6 HSPs)
chr7 (1-223)||(30130892-30131115)
chr7 (158-219)||(28180977-28181038)
chr7 (158-234)||(30125096-30125172)
chr7 (158-222)||(30165721-30165785)
chr7 (25-76)||(30165853-30165904)
chr7 (169-234)||(30120061-30120126)
[»] chr8 (4 HSPs)
chr8 (158-221)||(43164820-43164883)
chr8 (26-76)||(43164690-43164740)
chr8 (25-76)||(41311011-41311062)
chr8 (161-222)||(41311145-41311206)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 21426864 - 21426623
Alignment:
Q  1 ttgaggagcgggatgcatataaaaagtccaagatgaatggacagcgtattcttgcatcatccatatcttaactgtaaccctatttgcaacccatacaccg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21426864 ttgaggagcggaatgcatataaaaagtccaagatgaatggacagcgtattcttgcatcatccatatcttaattgtaaccctatttgcaacccatacaccg 21426765  T
Q  101 ataagcccgttaagtaccaacacatcaaattctaaacgagaagc-nnnnnnntattataatcatctggaagagctatctctgacattgttgtttccttta 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21426764 ataagcccgttaagtaccaacacatcaaattctaaacgagaagcataaagaatattataatcatctggaagagctatctctgacattgttgtttccttta 21426665  T
Q  200 aattaagggcaataataacatcccggttggtctcagaattat 241  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  21426664 aatcaagggcaataataacatcccggttggtctcagaattat 21426623  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30130892 - 30131115
Alignment:
Q  1 ttgaggagcgggatgcatataaaaagtccaagatgaatggacagcgtattcttgcatcatccatatcttaactgtaaccctatttgcaacccatacaccg 100  Q
    ||||||||| ||||||||| | ||||||||||||||||| || | |||||||||||||| ||||||||||||||||||   || || |||||||||||      
T  30130892 ttgaggagccggatgcatagagaaagtccaagatgaatgcactgtgtattcttgcatcacccatatcttaactgtaacaacatctgaaacccatacacta 30130991  T
Q  101 ataagcccgttaagtaccaacacatcaaattctaaacgagaagc-nnnnnnntattataatcatctggaagagctatctctgacattgttgtttccttta 199  Q
    || || || ||||||||||| | |||||| |||| | ||||| |        ||| | |||||| |||||||| |||||||||||||||  |||||||||    
T  30130992 attagtccattaagtaccaatatatcaaaatctagaggagaaacataccaaatatcaaaatcatttggaagagttatctctgacattgtcatttccttta 30131091  T
Q  200 aattaagggcaataataacatccc 223  Q
    |||||| ||| |||||||||||||    
T  30131092 aattaaaggctataataacatccc 30131115  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 28180977 - 28181038
Alignment:
Q  158 aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataaca 219  Q
    ||||||||||||||||||| |||||||||||  |||||||||||| || |||||||||||||    
T  28180977 aatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataaca 28181038  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 30125096 - 30125172
Alignment:
Q  158 aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctca 234  Q
    |||||| |||||||||||| ||||||||||| | ||||||||||| || ||||| ||||||||||  ||||||||||    
T  30125096 aatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctca 30125172  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 30165785 - 30165721
Alignment:
Q  158 aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcc 222  Q
    |||||| ||||||||||||||||| |||||| | ||||||||||| || ||||||||||||||||    
T  30165785 aatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatcc 30165721  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 30165904 - 30165853
Alignment:
Q  25 agtccaagatgaatggacagcgtattcttgcatcatccatatcttaactgta 76  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||    
T  30165904 agtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 30165853  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 30120061 - 30120126
Alignment:
Q  169 agagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctca 234  Q
    |||||||||||||| ||||| ||||||||||||| || |||||||||||||| |  ||||||||||    
T  30120061 agagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctca 30120126  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 43164820 - 43164883
Alignment:
Q  158 aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatc 221  Q
    |||||||||||||||| ||||||||||||||  |||||||||||| |  |||||||||||||||    
T  43164820 aatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatc 43164883  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 43164690 - 43164740
Alignment:
Q  26 gtccaagatgaatggacagcgtattcttgcatcatccatatcttaactgta 76  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||| ||||    
T  43164690 gtccaagatgaatgcacagcgtattcttgcattacccatatcttaagtgta 43164740  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 41311011 - 41311062
Alignment:
Q  25 agtccaagatgaatggacagcgtattcttgcatcatccatatcttaactgta 76  Q
    ||||||||||||||| |  |||||||||||||||| ||||||||||| ||||    
T  41311011 agtccaagatgaatgtattgcgtattcttgcatcacccatatcttaagtgta 41311062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 41311145 - 41311206
Alignment:
Q  161 catctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcc 222  Q
    ||||||| |||||  ||||||||| |||  |||||||||||| || ||||||||||||||||    
T  41311145 catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc 41311206  T

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