View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20545_low_2 (Length: 499)
Name: NF20545_low_2
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20545_low_2 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 66 - 499
Target Start/End: Original strand, 39082261 - 39082694
Alignment:
| Q |
66 |
tgtgtacgaggtggtagtggttatgtgagtgactctcctaaccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctc |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082261 |
tgtgtacgaggtggtagtggttatgtgagtgactctcctaaccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctc |
39082360 |
T |
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| Q |
166 |
atatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgac |
265 |
Q |
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| T |
39082361 |
atatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgac |
39082460 |
T |
|
| Q |
266 |
acgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggctt |
365 |
Q |
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| T |
39082461 |
acgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggctt |
39082560 |
T |
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| Q |
366 |
gggggaagaatgccaaggttcgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttatttcga |
465 |
Q |
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| T |
39082561 |
gggggaagaatgccaaggtttgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttattttga |
39082660 |
T |
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| Q |
466 |
gagattagtcctaacagtttgaatatttttctac |
499 |
Q |
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| T |
39082661 |
gagattagtcctaacagtttgaatatttttctac |
39082694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 107 - 457
Target Start/End: Original strand, 31726939 - 31727289
Alignment:
| Q |
107 |
ccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgac |
206 |
Q |
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| T |
31726939 |
ccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatctatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgat |
31727038 |
T |
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| Q |
207 |
ggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgattcct |
306 |
Q |
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| T |
31727039 |
ggtttcattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgtcataacaaagttatgctctttggtcatagtgattcct |
31727138 |
T |
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| Q |
307 |
atgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggttcgtaaattagttaatttttct |
406 |
Q |
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| T |
31727139 |
atgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggtaggtttattagttaatttttct |
31727238 |
T |
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| Q |
407 |
ctgccacaataattaagccctacttgccatttgttatatatttttactctt |
457 |
Q |
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| T |
31727239 |
ctgccacagtaattaagccctacttgccatttgttatatatttttactctt |
31727289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39082254 - 39082183
Alignment:
| Q |
1 |
aatgtgtataccatgaattatgatgttggtcttttcttgtattctaatacatggtccttcagcaatgtgtac |
72 |
Q |
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| T |
39082254 |
aatgtgtataccatgaattatgatgttggtcttttcttgtattctaatacatggtccttcagcaatgtgtac |
39082183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 39075959 - 39076048
Alignment:
| Q |
213 |
attgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgat |
302 |
Q |
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| T |
39075959 |
attgatgttattcatggatctacagctattactatttctaataatttcatgactcatcataataaggttatgcttttgggtcatagtgat |
39076048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 384
Target Start/End: Complemental strand, 7593472 - 7593253
Alignment:
| Q |
165 |
catatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatga |
264 |
Q |
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||||||||| | ||||||||||| ||||| |||||| ||| ||| | ||||||||| | |||||||| | ||| |||||||||| ||||| ||||||| |
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| T |
7593472 |
catatttggattgatcattgttctttgtctaattgtcgtgatggtcttattgatgttatacatggatctaatgctattactatttcaaataactatatga |
7593373 |
T |
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| Q |
265 |
cacgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggct |
364 |
Q |
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| | |||| ||||||||||||| || || ||||||||||| ||| | ||||| | ||||||| |||||| |||||||| |||||||| |||||||| |
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| T |
7593372 |
ctcatcatgacaaagttatgcttttgggacatagtgattcttatacacaagacaaggacatgcaagttactattgcttttaatcattttggtgaagggct |
7593273 |
T |
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| Q |
365 |
tgggggaagaatgccaaggt |
384 |
Q |
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| T |
7593272 |
tgtccaaagaatgccaaggt |
7593253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 384
Target Start/End: Original strand, 43131344 - 43131564
Alignment:
| Q |
164 |
tcatatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatg |
263 |
Q |
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|||| ||||||||||||||||||| ||||| || ||| ||| ||||||||||||| | ||||||| || || || |||| || ||||| ||||||||| |
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| T |
43131344 |
tcatgtttgggtggatcattgttctttgtctaactgtaatgatggtttgattgatgctattcatgggtccactgcaattaccatctctaacaattatatg |
43131443 |
T |
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| Q |
264 |
acacgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggc |
363 |
Q |
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|| | ||| | ||||||||||| || |||||||||||| | ||| ||||| || ||||||| |||||| |||||||| || ||||| ||||| | |
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| T |
43131444 |
actcaccatgataaagttatgcttttgggtcatagtgatacttatactcaagacaagaacatgcaagttactattgcttttaatcactttggtgaaggcc |
43131543 |
T |
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| Q |
364 |
ttgggggaagaatgccaaggt |
384 |
Q |
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||| |||||||||||||| |
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| T |
43131544 |
ttgttcaaagaatgccaaggt |
43131564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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