View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20545_low_6 (Length: 347)
Name: NF20545_low_6
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20545_low_6 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 8539231 - 8539554
Alignment:
| Q |
8 |
agggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539231 |
agggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaat |
8539330 |
T |
|
| Q |
108 |
attagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatattttttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539331 |
attagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatattttttc |
8539430 |
T |
|
| Q |
208 |
atgaattcttaatattataggaagcaaaagaattcaaatgtcaaaagaagtagactccagttatgttctctttatatcaaaatgactcttataaatgaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539431 |
atgaattcttaatattataggaagcaaaagaattcaaatgtcaaaagaagtagactccagttatgttctctttatatcaaaatgactcttataaatgaaa |
8539530 |
T |
|
| Q |
308 |
tttcatggaaatttaataataaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8539531 |
tttcatggaaatttaataataaaa |
8539554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 27954483 - 27954303
Alignment:
| Q |
18 |
agaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgtta |
117 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||| |||||||||| ||||| || ||| |||||| || | ||||||||||| | |||||||||| |
|
|
| T |
27954483 |
agaagagagttaaacttca---aaatgaaaagg-tgatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgtta |
27954388 |
T |
|
| Q |
118 |
ctagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatatt |
202 |
Q |
| |
|
|||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27954387 |
ctagtttcctgccagattttatcatcaacatattgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatatt |
27954303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 27920409 - 27920218
Alignment:
| Q |
10 |
ggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaa---cttaagaaaataaaactgatccaaggattcttcaccttgattaa |
106 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| ||| |||||| |||| ||||| || ||| |||||| || | ||||||||||| | |
|
|
| T |
27920409 |
ggtgggaaagaagagagttaaacttca---aaatgaaaagg-tgatgaggtaattgcttatgaaaacaacactaatccaaagagttttcaccttgatcat |
27920314 |
T |
|
| Q |
107 |
tattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatatt |
202 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27920313 |
cattagtgttactagtttcctgccagattttatcatcaacatattgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatatt |
27920218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 28151813 - 28151670
Alignment:
| Q |
12 |
tgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatatta |
111 |
Q |
| |
|
||||||| ||||||| | ||||||| |||| ||||||| || ||||||||||||||||||||| ||||||| |||||||||||||||| | |||| |
|
|
| T |
28151813 |
tgggaaacaagagagctaaacttca---aaataaaaagggcgatgaggtaacttaagaaaataaaagcgatccaaagattcttcaccttgatcatcatta |
28151717 |
T |
|
| Q |
112 |
gtgttactagtttcctgccaaagtttaacatcaacatcttgagtggt |
158 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
28151716 |
gtgttactagtttcctgccagatttcaacatcaacatcttgagtggt |
28151670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 11421152 - 11421007
Alignment:
| Q |
11 |
gtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatatt |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||| | ||| |
|
|
| T |
11421152 |
gtgggaaagaagagagttcaacttct---aaatgaaaagggtgatgtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgatcatcatt |
11421056 |
T |
|
| Q |
111 |
agtgttactagtttcctgccaaagtttaacatcaacatcttgagtggta |
159 |
Q |
| |
|
|| |||||||||||||| || | ||||||||||||||||||| ||||| |
|
|
| T |
11421055 |
agccttactagtttcctgacagattttaacatcaacatcttgaatggta |
11421007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 17744469 - 17744615
Alignment:
| Q |
8 |
agggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaat |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||| ||||||| |||| || |||||| | | |
|
|
| T |
17744469 |
agggtgagaaagaagagagttcaacttca---aaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatc |
17744565 |
T |
|
| Q |
108 |
attagtgttactagtttcctgccaaagtttaacatcaacatcttgagtgg |
157 |
Q |
| |
|
|||||| || |||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
17744566 |
attagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg |
17744615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 19045789 - 19045935
Alignment:
| Q |
8 |
agggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaat |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||| ||||||| |||| || |||||| | | |
|
|
| T |
19045789 |
agggtgagaaagaagagagttcaacttca---aaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatc |
19045885 |
T |
|
| Q |
108 |
attagtgttactagtttcctgccaaagtttaacatcaacatcttgagtgg |
157 |
Q |
| |
|
|||||| || |||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
19045886 |
attagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg |
19045935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 28162015 - 28161925
Alignment:
| Q |
39 |
aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgc |
129 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |||||||| || ||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
28162015 |
aaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttactagtttcctgc |
28161925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 28150106 - 28149985
Alignment:
| Q |
39 |
aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagttta |
138 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |||||| | || ||||||||||||| | |||||||||||||||||||||| | ||| |
|
|
| T |
28150106 |
aaaatgaaaagggtgatgagataacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttactagtttcctgcaagttatta |
28150007 |
T |
|
| Q |
139 |
acatcaacatcttgagtggtaa |
160 |
Q |
| |
|
|||| ||| ||||||||||||| |
|
|
| T |
28150006 |
acatgaacttcttgagtggtaa |
28149985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 28037604 - 28037455
Alignment:
| Q |
10 |
ggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatat |
109 |
Q |
| |
|
||||| ||||||| ||||| ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||| || |||| ||||||| | || |
|
|
| T |
28037604 |
ggtggaaaagaagcgagttaaacttca---aaatgaaaagggtgatgaggtaactttagaaaataacactgatccaaagagtctttaccttgaccatcat |
28037508 |
T |
|
| Q |
110 |
tagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaaca |
162 |
Q |
| |
|
|||||||||||||||| |||| ||| | ||||||||||| |||||||||| |
|
|
| T |
28037507 |
tagtgttactagtttcgcgccagtttttgagatcaacatcttcagtggtaaca |
28037455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 28186058 - 28185968
Alignment:
| Q |
39 |
aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgc |
129 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |||||||| || ||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
28186058 |
aaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc |
28185968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 27458884 - 27458965
Alignment:
| Q |
79 |
tgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaa |
160 |
Q |
| |
|
|||||||| || ||||||||||||| | ||||| || |||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
27458884 |
tgatccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaa |
27458965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 27776634 - 27776545
Alignment:
| Q |
66 |
aagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagt |
155 |
Q |
| |
|
|||||||||||| |||||||| || | ||||||||||| | |||||| ||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
27776634 |
aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagt |
27776545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 28479866 - 28479930
Alignment:
| Q |
39 |
aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgat |
103 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
28479866 |
aaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgat |
28479930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 28509049 - 28509113
Alignment:
| Q |
39 |
aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgat |
103 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
28509049 |
aaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgat |
28509113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 27920120 - 27920073
Alignment:
| Q |
232 |
caaaagaattcaaatgtcaaaagaagtagactccagttatgttctctt |
279 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
27920120 |
caaaagaatccaaatgtcaaaagtagtagactccaattatgttctctt |
27920073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 28151620 - 28151562
Alignment:
| Q |
163 |
tcaccatcttcctacaaaattcatataaaagaatgatattttttcatgaattcttaatatt |
223 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||| || |||||||||||||||| |
|
|
| T |
28151620 |
tcaccttcttcctacaaaattcaaataaaagaatgatatcatt--atgaattcttaatatt |
28151562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 27378598 - 27378544
Alignment:
| Q |
57 |
aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatatta |
111 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | ||||||||||||||| ||||| |
|
|
| T |
27378598 |
aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattattatta |
27378544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 27459011 - 27459051
Alignment:
| Q |
161 |
catcaccatcttcctacaaaattcatataaaagaatgatat |
201 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
27459011 |
catcgccatcgtcctacaaaattcaaataaaagaatgatat |
27459051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 8020971 - 8020852
Alignment:
| Q |
39 |
aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagttta |
138 |
Q |
| |
|
||||||||||||| || || ||||||||||||| ||||| ||||||| |||||||||||| ||| |||||||||||||||||||||||| | || | |
|
|
| T |
8020971 |
aaaatgaaaagggcgatgagataacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttca |
8020872 |
T |
|
| Q |
139 |
acatcaacatcttgagtggt |
158 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8020871 |
acatcaacatcttgagtggt |
8020852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 22393571 - 22393515
Alignment:
| Q |
57 |
aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt |
113 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | |||||||||||||| |||||||| |
|
|
| T |
22393571 |
aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt |
22393515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 19216 - 19095
Alignment:
| Q |
39 |
aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagttta |
138 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||||||| | | || ||||||||||||||||| | ||| |
|
|
| T |
19216 |
aaaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttatta |
19117 |
T |
|
| Q |
139 |
acatcaacatcttgagtggtaa |
160 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19116 |
acatcaacatcttgagtggtaa |
19095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 52825 - 52881
Alignment:
| Q |
57 |
aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt |
113 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | |||||||||||||| |||||||| |
|
|
| T |
52825 |
aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt |
52881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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