View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20545_low_7 (Length: 346)
Name: NF20545_low_7
Description: NF20545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20545_low_7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 43458081 - 43457745
Alignment:
| Q |
10 |
gcagagaatgggtagtagagataatccaacacttgagtcagccactggagttgctccaaagagaggaatggttcttccttttcaaccacttgcaatgtct |
109 |
Q |
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| T |
43458081 |
gcagagaatgggtagtagagataatccaacacttgagtcagccactggagttgctccaaagagaggaatggttcttccttttcaaccacttgcaatgtct |
43457982 |
T |
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| Q |
110 |
tttgatagtgttaattactatgtcgatatgccagctgtaagaacatcatcctcatagcctttttccatatgactctacaatatgaatcatcaaatgtacc |
209 |
Q |
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| T |
43457981 |
tttgatagtgttaattactatgtcgatatgccagctgtaagaacatcatcctcatagcctttttccatatgactctacaatatgaatcatcaaatgtacc |
43457882 |
T |
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| Q |
210 |
tatgaagttttaatttgaactttgaataggaaatgaaagagcaaggagtaacagataacagactacaattgcttagagaagtaactggtgcattcaggcc |
309 |
Q |
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| T |
43457881 |
tatgaagttttaatttgaactttgaataggaaatgaaagagcaaggagtaacagataataggctacaattgcttagagaagtaactggtgcattcaggcc |
43457782 |
T |
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| Q |
310 |
tggagttctaacggctttaatgggagttagtggagct |
346 |
Q |
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| T |
43457781 |
tggagttctaacggctttaatgggagttagtggagct |
43457745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 4500936 - 4501015
Alignment:
| Q |
71 |
agaggaatggttcttccttttcaaccacttgcaatgtcttttgatagtgttaattactatgtcgatatgccagctgtaag |
150 |
Q |
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| T |
4500936 |
agaggaatgattctacctttccaaccacttgcaatgtcctttgagagtgttaattactttgtggacatgcctgcagtaag |
4501015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 4501103 - 4501208
Alignment:
| Q |
237 |
aggaaatgaaagagcaaggagtaacagataacagactacaattgcttagagaagtaactggtgcattcaggcctggagttctaacggctttaatgggagt |
336 |
Q |
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| T |
4501103 |
aggaaatgaaagagcagggagtgacagaagataggttacaattgctaagggaagtaaccggttcctttaggcctggagttcttactgcactaatgggagt |
4501202 |
T |
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| Q |
337 |
tagtgg |
342 |
Q |
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|||||| |
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| T |
4501203 |
tagtgg |
4501208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 2886895 - 2886946
Alignment:
| Q |
295 |
tggtgcattcaggcctggagttctaacggctttaatgggagttagtggagct |
346 |
Q |
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| T |
2886895 |
tggtgcatttaggcctggtgttctcacagccttaatgggagttagtggagct |
2886946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 2897481 - 2897430
Alignment:
| Q |
295 |
tggtgcattcaggcctggagttctaacggctttaatgggagttagtggagct |
346 |
Q |
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| T |
2897481 |
tggtgcatttaggcctggtgttctcacagcattaatgggagttagtggagct |
2897430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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