View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20546_high_1 (Length: 522)
Name: NF20546_high_1
Description: NF20546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20546_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 6 - 504
Target Start/End: Complemental strand, 37219542 - 37219048
Alignment:
| Q |
6 |
aggagcagagaccctaccattcttatccacactactgttaggaaacagagacatgatgcagttggtcttttctttgnnnnnnnnnnnnagaaagtatggt |
105 |
Q |
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| T |
37219542 |
aggagcagagaccctaccattcttatccacactactgttaggaaacagagacatgatgcagttggtcttttctttgttttttttt---agaaagtatggt |
37219446 |
T |
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| Q |
106 |
cgttttatatctaatcaaaaaactttaatgccttactctcacatgacatatgcgacaaaacatccttactcttctaattcaagtgtttacatatacagtt |
205 |
Q |
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| T |
37219445 |
cgttttatatctaatcaaaaaactttaatgccttactctcacatgacatatgcgacaaaacatccttactcttctaattcaagtgtttacatatacagtt |
37219346 |
T |
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| Q |
206 |
aaaattggcataatctttatagtttttgtttgagaaatttttatagttgttagttacatttctttcttaaacaagtttatatggaagtctcaagatcaat |
305 |
Q |
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| T |
37219345 |
aaaattggcataatctt-atagtttttgtttgagaaatttatatagttgttagttacatttctttcttaaacaagtttatatggaagtctcaagatcaat |
37219247 |
T |
|
| Q |
306 |
tacatttcctttaagataccataattatatgagtgttttttaaagaactatttgagttattaattcaattctaatcctaggttggcaagaaaattatcgc |
405 |
Q |
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| T |
37219246 |
tacatttcctttaagataccataattatatgagtgtttttttaagaactatttgagttattaattcaattctaatcctaggttggcaagaaaattatccc |
37219147 |
T |
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| Q |
406 |
aagagttagcttctctgtaaatatacttcaacgagacattccaataaaaaatatggataagacaaacaatgtcgaatatgatattataatcaatgtact |
504 |
Q |
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| T |
37219146 |
aagagttagcttctctgtaaatatacttcaacgagacattccaataaaaaatatggataagacaaacaatgtcgagtatgatattataatcaatgtact |
37219048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 476
Target Start/End: Original strand, 6411940 - 6412011
Alignment:
| Q |
405 |
caagagttagcttctctgtaaatatacttcaacgagacattccaataaaaaatatggataagacaaacaatg |
476 |
Q |
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||||||||| |||| ||||||||||||| ||||||||||| |||| ||||| |||||||||| ||| |||| |
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| T |
6411940 |
caagagttaacttccttgtaaatatactttaacgagacatttcaattaaaaagatggataagataaagaatg |
6412011 |
T |
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