View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20546_low_4 (Length: 326)
Name: NF20546_low_4
Description: NF20546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20546_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 12321957 - 12321716
Alignment:
| Q |
1 |
tttttctttttgaatcatagatggagtgataaatacctcatgaaattcaaaacacaaatagaagatatcatgtttgaaaccagaacaccacatatatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
12321957 |
tttttctttttgaatcatagatggagtgataaatacctcatgaaattcaagacacaaatagaagatatcatgttcgaaaccagaacaccacagatatcca |
12321858 |
T |
|
| Q |
101 |
aactaacaattttagcatttgtcaattaagaaaattctaacaaccatgcaatttggtacaaattaattttatcacgaaacaatgtgtacaatttttaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12321857 |
aactaacaattttagcatttgtcaattaagaaaattctaacaaccatgcaatttggtacaaattaattttatcacgaaacaatgtgtacaatttttaatg |
12321758 |
T |
|
| Q |
201 |
cgagaattgatgctgaatttagtcttgagaaatatttacttg |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12321757 |
cgagaattgatgctgaatatagtcttgagaaatatttacttg |
12321716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University