View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20547_low_4 (Length: 321)
Name: NF20547_low_4
Description: NF20547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20547_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 40541343 - 40541648
Alignment:
| Q |
1 |
agcacgattctgaagaacaagaatcaaatcgtgccagtgttggtggtggtgcaccgttctcatcgaacgaagaagatgatcgcagccaaggtttagagct |
100 |
Q |
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| T |
40541343 |
agcacgattctgaagaacaagaatcaaatcgtgccagtgttggtggtggtgcaccgttctcatcgaacgaagaagatgatcgcagccaaggtttagagct |
40541442 |
T |
|
| Q |
101 |
tggttcagcagccggaccaggagatgtggtcggccgccgtccacgcggaagaccgccgggatcgaaaaacaaggccaaaccaccggtgatcatcactcga |
200 |
Q |
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| T |
40541443 |
tggttcagcagccggaccaggagatgtggtaggccgccgtccacgcggcagaccgccgggatcgaaaaacaaggccaaaccaccggtgatcatcactcga |
40541542 |
T |
|
| Q |
201 |
gagagtgccaacactctcagagctcatattcttgaagttgccggcggttcagatgtttttgaatgcgtatctacctatgctcgccgtcgtcaacgtggga |
300 |
Q |
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| T |
40541543 |
gagagtgccaacactctcagagctcatattcttgaagttgccggcggttcagatgtttttgaatgcgtatctacctatgctcgccgccgtcaacgtggga |
40541642 |
T |
|
| Q |
301 |
tctgtg |
306 |
Q |
| |
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|||||| |
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| T |
40541643 |
tctgtg |
40541648 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 30874157 - 30874066
Alignment:
| Q |
147 |
ggaagaccgccgggatcgaaaaacaaggccaaaccaccggtgatcatcactcgagagagtgccaacactctcagagctcatattcttgaagt |
238 |
Q |
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|||||||| ||||| || || ||||| | |||||||||||||||||||| |||||||||| ||||| || || ||||| || |||||||| |
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| T |
30874157 |
ggaagacctccgggctcaaagaacaaacctaaaccaccggtgatcatcacaagagagagtgcaaacacacttagggctcacatccttgaagt |
30874066 |
T |
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