View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20547_low_6 (Length: 267)
Name: NF20547_low_6
Description: NF20547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20547_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 4664846 - 4665083
Alignment:
| Q |
15 |
gatgaaaatggatgtttaaaagctttcaatggtttagcaaattaccacaacatgcagctcaattttgccttacagacactaaggacgaagaatcctcatg |
114 |
Q |
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| T |
4664846 |
gatgaaaatggatgtttaaaagctttcaatggtttagcaaattaccacaacatgcagctcaattttgccttacagacactaaggaccaagaatcctcatg |
4664945 |
T |
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| Q |
115 |
caagaataatgtatgctgactattttggtgcagcaatgcgtttcttccattcaccaagacaatatggttagtttatttccatggttttatctaatgtgta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
4664946 |
caagaataatgtatgctgactattttggtgcagcaatgcgtttcttccattcaccaagacaatatggttagtttattttcatggctttatctaatgtgta |
4665045 |
T |
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| Q |
215 |
taaacaaaccggtactgtattatgcacaaacttatttt |
252 |
Q |
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| T |
4665046 |
taaacaaaccggtactgtattatgcacaaacttatttt |
4665083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 4668014 - 4668218
Alignment:
| Q |
15 |
gatgaaaatggatgtttaaaagctttcaatggtttagcaaattaccacaacatgcagctcaattttgccttacagacactaaggacgaagaatcctcatg |
114 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
4668014 |
gatgaaaatggatgtttaaaatctttcaatgatttagcaaagaaccacaacatgcagctcaatattgccttacagacactaaggaagaagaatcctcatg |
4668113 |
T |
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| Q |
115 |
caagaataatgtatgctgactattttggtgcagcaatgcgtttcttccattcaccaagacaatatggttagtttatttccatggttttatctaatgtgta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||| ||| ||||||||| | |
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| T |
4668114 |
caagaataatgtatgctgactattttggtgcagcaaagcgtttcttccattcaccaagacactacggttagtttatttccgtggctttgtctaatgtgca |
4668213 |
T |
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| Q |
215 |
taaac |
219 |
Q |
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||||| |
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| T |
4668214 |
taaac |
4668218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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