View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20548_high_10 (Length: 365)

Name: NF20548_high_10
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20548_high_10
NF20548_high_10
[»] chr6 (15 HSPs)
chr6 (14-346)||(23257608-23257940)
chr6 (14-346)||(23251635-23251964)
chr6 (14-346)||(23247223-23247552)
chr6 (14-346)||(23266169-23266495)
chr6 (191-345)||(23283458-23283612)
chr6 (64-166)||(23289629-23289731)
chr6 (71-166)||(23283296-23283391)
chr6 (19-122)||(23391074-23391174)
chr6 (213-333)||(23633983-23634103)
chr6 (203-333)||(23506631-23506761)
chr6 (194-346)||(23391243-23391395)
chr6 (210-333)||(23506800-23506923)
chr6 (210-346)||(23289790-23289926)
chr6 (64-137)||(23593009-23593082)
chr6 (68-105)||(23633835-23633872)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 23257608 - 23257940
Alignment:
Q  14 tcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23257608 tcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctcaacaattctg 23257707  T
Q  114 gcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatatcattaatcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  23257708 gcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccacgacaggtactacggtgtcaatatcattaatcat 23257807  T
Q  214 taaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccgag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  23257808 taaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgag 23257907  T
Q  314 tctgcaaaattgagacaggcatagcggcccctc 346  Q
    |||||||||||||||||||||||||||||||||    
T  23257908 tctgcaaaattgagacaggcatagcggcccctc 23257940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 23251635 - 23251964
Alignment:
Q  14 tcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctg 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  23251635 tcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgccatattcctccacaactctg 23251734  T
Q  114 gcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatatcattaatcat 213  Q
    |||||||||||| |||||   ||||||||||||| |||| ||||||||||| ||||| ||| ||  | |||| ||| ||||||||||| ||| |  ||||    
T  23251735 gcatattcaacacttcct---cttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcactggtcat 23251831  T
Q  214 taaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccgag 313  Q
    |||||| ||||||||||||||||||||||| ||||  | ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  23251832 taaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgag 23251931  T
Q  314 tctgcaaaattgagacaggcatagcggcccctc 346  Q
    |||||||||||||||||||||||||||||||||    
T  23251932 tctgcaaaattgagacaggcatagcggcccctc 23251964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 23247223 - 23247552
Alignment:
Q  14 tcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctg 113  Q
    |||||||||||||| ||||||||||||||||| |||||||   ||||||||||||||||||| ||||| ||||| |  |||||||||||| |||| ||||    
T  23247223 tcatcatcttgaaaatcttgtacatgaatatcgtcatact---catgatactcaaagctatgtgtaggtgacatcaacgccatattcctccacaactctg 23247319  T
Q  114 gcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatatcattaatcat 213  Q
    |||||||||||||||||| || ||| || |||||||||||||||||||||| ||||||||||||  |||||  |||||  ||||||||||  ||| ||||    
T  23247320 gcatattcaacatttcctcctgttcatcaacttccacacaaaacatattcagctcctttgtggcgacgacatctacgatagtgtcaatattgttagtcat 23247419  T
Q  214 taaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccgag 313  Q
    |||||| ||||||||||||||||||||||| ||||  | ||| |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  23247420 taaagtattgtctggtctaaaagcttcggccgcttttgtagctgccttttgaatatcttttattgcggaagttgctggaataggaaggcgccacaccgag 23247519  T
Q  314 tctgcaaaattgagacaggcatagcggcccctc 346  Q
    ||||  |||||||||||||||||||||||||||    
T  23247520 tctgagaaattgagacaggcatagcggcccctc 23247552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 23266169 - 23266495
Alignment:
Q  14 tcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctg 113  Q
    |||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | || || |    
T  23266169 tcatcatcttgaaagtcttgaaaatgaaaatcttcatattgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctccaaaactccg 23266268  T
Q  114 gcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatatcattaatcat 213  Q
    ||||||||||||||||||   |||||||   |||||||||||||||||||||||||||||||||  | |||| ||| || || ||||| |   |||||||    
T  23266269 gcatattcaacatttcct---cttcttc---ttccacacaaaacatattcaactcctttgtggcgacaacagctacaacagtctcaatgttggtaatcat 23266362  T
Q  214 taaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccgag 313  Q
    || ||| ||||||||||||||||||||||| ||||  | ||| |||||||||||||||||||| | ||||||| |||||||||||||||||||||||||     
T  23266363 tatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgaggaagttgctggaataggaagccgccacaccgaa 23266462  T
Q  314 tctgcaaaattgagacaggcatagcggcccctc 346  Q
    |||||||||||||||||||| ||||| ||||||    
T  23266463 tctgcaaaattgagacaggcgtagcgacccctc 23266495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 345
Target Start/End: Original strand, 23283458 - 23283612
Alignment:
Q  191 acggtgtcaatatcattaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatctttta--tc-gcggaagtta 287  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||||| ||||| ||||| ||||| ||| ||||||| ||||||   || ||||| |       
T  23283458 acggtgtcaatgtcgttagtcattaaagtcttgtctggtctgaaagcctcggcggcttctgcagctgccctttgaatgtcttttgcttcagcggagg--- 23283554  T
Q  288 ctggaataggaagccgccacaccgagtctgcaaaattgagacaggcatagcggcccct 345  Q
    | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  23283555 caggaataggaagcctccacaccgagtctgcaaagttgagacaggcatagcggcccct 23283612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 23289629 - 23289731
Alignment:
Q  64 ctcaaagctatgcgtaggggacattagtgccatattcctcaacaattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattc 163  Q
    |||||| ||||| |||||||||||||||||||||||  || |||| ||| |||||||||||| |||||  |||| |||||||||||||||||||||||||    
T  23289629 ctcaaaactatgtgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttcctcttctttttcgacttccacacaaaacatattc 23289728  T
Q  164 aac 166  Q
    |||    
T  23289729 aac 23289731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 23283296 - 23283391
Alignment:
Q  71 ctatgcgtaggggacattagtgccatattcctcaacaattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaac 166  Q
    ||||| |||||||||||||  |||||||||||| |||  |||| ||||||||||| |||||  |||| ||||||||||||||||||||||||||||    
T  23283296 ctatgtgtaggggacattaacgccatattcctccacatctctgacatattcaacacttcctcttctttttcgacttccacacaaaacatattcaac 23283391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 23391074 - 23391174
Alignment:
Q  19 atcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctggcata 118  Q
    ||||||||||||||| |||||||||| |||||| |   ||| |||| || ||||||| ||||| |||||||||||||||||||||||||| ||||||||     
T  23391074 atcttgaaagtcttgaacatgaatattttcatatt---cattatacccagagctatgtgtaggagacattagtgccatattcctcaacaactctggcatg 23391170  T
Q  119 ttca 122  Q
    ||||    
T  23391171 ttca 23391174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 333
Target Start/End: Original strand, 23633983 - 23634103
Alignment:
Q  213 ttaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccga 312  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| |||||| || || | | |||  | ||||||||||||||| |  | ||    
T  23633983 ttaaagtcttgtctggtctgaaagcctcggcagcttctgcagccgtcttttgtatatctcttgtctctgtagtggcaggaataggaagccgcgaggcaga 23634082  T
Q  313 gtctgcaaaattgagacaggc 333  Q
    ||| |||||||| ||||||||    
T  23634083 gtcagcaaaattaagacaggc 23634103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 333
Target Start/End: Original strand, 23506631 - 23506761
Alignment:
Q  203 tcattaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagcc 302  Q
    |||||| || ||||||||||||||||||| ||||| || | |||||| |||||||| ||||| |||||| || || |   |||  | |||||||||||||    
T  23506631 tcattagtcgttaaagtcttgtctggtctgaaagcctcagtagcttctgcagccgcgttttgtatatctcttgtctctttagtggcaggaataggaagcc 23506730  T
Q  303 gccacaccgagtctgcaaaattgagacaggc 333  Q
    || |  ||||||||||||| |||||||||||    
T  23506731 gcgaggccgagtctgcaaagttgagacaggc 23506761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 23391243 - 23391395
Alignment:
Q  194 gtgtcaatatcattaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaa 293  Q
    |||||||| |||||| | ||| |||||||||||||||| ||||| || || || |  |||||||||||||| |||||||||  |   |  ||  | || |    
T  23391243 gtgtcaatgtcattagtaattgaagtcttgtctggtctgaaagcctcagcggcctgtgcagccgccttttgtatatcttttgcctgagtggtggcaggta 23391342  T
Q  294 taggaagccgccacaccgagtctgcaaaattgagacaggcatagcggcccctc 346  Q
    |||| ||||||||| | ||||||||||| ||||||||||| ||||||||||||    
T  23391343 tagggagccgccacgcggagtctgcaaagttgagacaggcgtagcggcccctc 23391395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 333
Target Start/End: Original strand, 23506800 - 23506923
Alignment:
Q  210 tcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacac 309  Q
    |||||| ||||||| ||||||| || || || |||||||||||||||| |||||| ||||||||| || || ||||  | |||||||| |||  | |  |    
T  23506800 tcattacagtcttgcctggtctgaatgcctcagcagcttcagcagccgtcttttgtatatcttttgtctcgcaagtagcaggaatagggagcgtcaaggc 23506899  T
Q  310 cgagtctgcaaaattgagacaggc 333  Q
    |||||||||||| |||||||||||    
T  23506900 cgagtctgcaaagttgagacaggc 23506923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 346
Target Start/End: Original strand, 23289790 - 23289926
Alignment:
Q  210 tcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatctttta--tc-gcggaagttactggaataggaagccgcca 306  Q
    |||||||||||||||||||||| ||||| || || |||||  |||| ||| ||||||| ||||||   || ||||| |   | ||||||||||||  |||    
T  23289790 tcattaaagtcttgtctggtctgaaagcctcagcggcttctccagctgccctttgaatgtcttttgcttcagcggagg---caggaataggaagcttcca 23289886  T
Q  307 caccgagtctgcaaaattgagacaggcatagcggcccctc 346  Q
    | ||||||||||||| ||||||||||| ||||||||||||    
T  23289887 cgccgagtctgcaaagttgagacaggcgtagcggcccctc 23289926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 23593009 - 23593082
Alignment:
Q  64 ctcaaagctatgcgtaggggacattagtgccatattcctcaacaattctggcatattcaacatttcctgctctt 137  Q
    ||||| |||||| |||||||||||||| ||||||||||||||| | ||||| || ||||||| ||||| |||||    
T  23593009 ctcaacgctatgtgtaggggacattagagccatattcctcaacgactctggaatgttcaacacttcctcctctt 23593082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 23633835 - 23633872
Alignment:
Q  68 aagctatgcgtaggggacattagtgccatattcctcaa 105  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  23633835 aagctatgtgtaggggacattagagccatattcctcaa 23633872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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