View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_high_14 (Length: 304)
Name: NF20548_high_14
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 48041564 - 48041259
Alignment:
| Q |
2 |
aaccaccatttatgtgactttttaagtaacgagtgattgaacggtgaaaatcaattgacaatgtaaaaatgttgtacagttccactgtatgaattagatc |
101 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48041564 |
aaccaccatttatgtgactttttaagtaacaagtgattgaacggtgaaaatcaattgacaatgtaaaaatgttgtacagttccactgtatgaattagatc |
48041465 |
T |
|
| Q |
102 |
cttgtaaaaataataaagaatattttttccatatcagcgtcattac------aattctgctctttagccaacacaaaacactcgcgcccatctgaattga |
195 |
Q |
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|
|||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48041464 |
cttgtaaaaatagtaaagaatattttttccataccagcgtcattacaatctgaattctgctctttagccaacacaaaacactcgcgcccatttgaattga |
48041365 |
T |
|
| Q |
196 |
tcattatacctatacgtgagt---atcacgcaccttatatgcctatgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttct |
292 |
Q |
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|
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
48041364 |
tcattatacctatgtgtgagttaactcacgcatcttatatgcctatgcgtgacttaagtgtatgtgacagcaacacaaaaacataacacttcacttttct |
48041265 |
T |
|
| Q |
293 |
tctcac |
298 |
Q |
| |
|
| |||| |
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|
| T |
48041264 |
tttcac |
48041259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 40962841 - 40962796
Alignment:
| Q |
148 |
aattctgctctttagccaacacaaaacactcgcgcccatctgaatt |
193 |
Q |
| |
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|
| T |
40962841 |
aattctgctcttctcccaacacaaaacactcgcgcccaactgaatt |
40962796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 32303802 - 32303838
Alignment:
| Q |
148 |
aattctgctctttagccaacacaaaacactcgcgccc |
184 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |
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| T |
32303802 |
aattctgctcttcacccaacacaaaacactcgcgccc |
32303838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 27332779 - 27332834
Alignment:
| Q |
238 |
tgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttctt |
293 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
27332779 |
tgcgtgacttacgtgtatatgacagcaacacataaacataacacttcacttttctt |
27332834 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 18206923 - 18206870
Alignment:
| Q |
238 |
tgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| || ||||||||||| |
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|
| T |
18206923 |
tgcgtgacttaagtgtatatgacaacaaaacagaaacattacccttcacttttc |
18206870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 19222290 - 19222346
Alignment:
| Q |
148 |
aattctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattatac |
204 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| || ||||||||| |||||||| |
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|
| T |
19222290 |
aattctgctctttagctaacacaaaacgctcgcgctcaactgaattgaccattatac |
19222346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 293
Target Start/End: Complemental strand, 28617267 - 28617123
Alignment:
| Q |
150 |
ttctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattatacctatacgtgagta---tcacgcaccttat-atgcctatgcgtgac |
245 |
Q |
| |
|
|||| ||||||| ||||||||||| || ||| ||| ||||||||| |||||||| | ||||||| |||| |||||||| |||||| |||||||| |
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| T |
28617267 |
ttctactctttaatcaacacaaaacgcttgcgtccaactgaattgactgttatacctctgcgtgagttaactcacacaccttattatgcctctgcgtgac |
28617168 |
T |
|
| Q |
246 |
ttaagtgtatatgacaacaacacaaaaacataacacttcacttttctt |
293 |
Q |
| |
|
||||| ||||| ||||||| || || |||||||||||||||||||| |
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|
| T |
28617167 |
ttaagagtataagacaaca---cagaaccataacacttcacttttctt |
28617123 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 3378239 - 3378187
Alignment:
| Q |
151 |
tctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattata |
203 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||||||||| ||||||| |
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|
| T |
3378239 |
tctgctctttagccaacacaaaacgctcccgcccaactgaattgaccattata |
3378187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 42294650 - 42294614
Alignment:
| Q |
148 |
aattctgctctttagccaacacaaaacactcgcgccc |
184 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |
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|
| T |
42294650 |
aattctgctcttcacccaacacaaaacactcgcgccc |
42294614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 50561770 - 50561735
Alignment:
| Q |
148 |
aattctgctctttagccaacacaaaacactcgcgcc |
183 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
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| T |
50561770 |
aattctgctctttatccaacacaaaacactcgcgcc |
50561735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 21066273 - 21066224
Alignment:
| Q |
242 |
tgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttc |
291 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||| || ||||||||||| |
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|
| T |
21066273 |
tgacttaagtgtatatgacagcaaaacataaacattacccttcacttttc |
21066224 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 15105919 - 15105955
Alignment:
| Q |
148 |
aattctgctctttagccaacacaaaacactcgcgccc |
184 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
15105919 |
aattctgctctttatccagcacaaaacactcgcgccc |
15105955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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