View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_high_16 (Length: 301)
Name: NF20548_high_16
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 49041005 - 49041272
Alignment:
| Q |
16 |
cagagacagggacactaacgggatacttatgaacagagtcatcccaggggttgccccgccaatccccaacgacgggcaagtcgcgcacggccttccacac |
115 |
Q |
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| T |
49041005 |
cagaaacagggacactaacgggatacttatgaacagagtcatcccaggggttgccccgccaatccccaacgacgggcaagtcacgcacggccttccacac |
49041104 |
T |
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| Q |
116 |
ggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttcataccat |
215 |
Q |
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| T |
49041105 |
ggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaacccggccctttgcctcagtataagccagttcataccat |
49041204 |
T |
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| Q |
216 |
agagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcact |
283 |
Q |
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| T |
49041205 |
agagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcact |
49041272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 49040316 - 49040232
Alignment:
| Q |
109 |
tccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctc |
193 |
Q |
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| T |
49040316 |
tccatacggcactgttacatttaaaacctgccccaaatgcaatctgccacaccctatccccctttgaaactctacccttggcctc |
49040232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 284
Target Start/End: Complemental strand, 15239692 - 15239531
Alignment:
| Q |
123 |
ttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttcataccatagagaac |
222 |
Q |
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|||||||||||||| || ||||||||||| ||||| | ||| |||||| || ||| || || || ||||||||||||| ||||||||| | |||| |
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| T |
15239692 |
ttacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattcataccacaatgaac |
15239593 |
T |
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| Q |
223 |
tgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactt |
284 |
Q |
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| T |
15239592 |
tactagaagtgttaccaaatctattcagtgtcatccttgatggttccatatgccaatcactt |
15239531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 283
Target Start/End: Complemental strand, 34053404 - 34053231
Alignment:
| Q |
110 |
ccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttca |
209 |
Q |
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|||||| || |||||||| ||||| || || ||||||||||| ||||| || ||| |||||| || ||| || || || ||||||||||||| |||| |
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| T |
34053404 |
ccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttttctaatcctccctttagcttcagtataagccaattca |
34053305 |
T |
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| Q |
210 |
taccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcact |
283 |
Q |
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||||||| ||||| || ||||| || |||||||||| || ||||| | || |||||||||||||| ||||| |
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| T |
34053304 |
taccataatgaactactagaagtattaccaaatctatttagtgtcattcttgatggttccatatgccaatcact |
34053231 |
T |
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