View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20548_high_18 (Length: 249)
Name: NF20548_high_18
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 51253154 - 51253079
Alignment:
| Q |
32 |
gaaaagaagcgttattgtagctgctagacagttgtttttatgagaagagcattgtacccagaaaatggtgagaacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51253154 |
gaaaagaagcgttattgtagctgctagacagttgtttttatgagaagagcattgtacccagaaaatggtgacaacc |
51253079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 51252942 - 51252888
Alignment:
| Q |
178 |
agatggtagaaaagagatgaacactcacaacttgttggaaaccagagaggtaaat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51252942 |
agatggtagaaaagagatgaacactcacaacttgttggaaaccagagaggtaaat |
51252888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 150
Target Start/End: Complemental strand, 51253026 - 51252995
Alignment:
| Q |
119 |
ataaaatataatcatatatgttggtgtcggaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
51253026 |
ataaaatataatcatatatgttggtgtcggaa |
51252995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University