View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_high_2 (Length: 556)
Name: NF20548_high_2
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 22328978 - 22328597
Alignment:
| Q |
11 |
cagagacagaagcctgatggatcatcggcgaaagatagtgatgatggtgatcaacgatattcgccgtcgccattgaaggatctatccaagcacgaactga |
110 |
Q |
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| T |
22328978 |
cagagacagaagcctgatggatcatcggcgaaagatagtgatgatggtgatcaacgatattcgccgtcgccattgaaggatctatccaagcacgaactga |
22328879 |
T |
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| Q |
111 |
aggattgtaactggactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaatccagcaccatgg |
210 |
Q |
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| T |
22328878 |
aggattgtaactggactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaatccagcaccatgg |
22328779 |
T |
|
| Q |
211 |
ccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctcttgatgctgat |
310 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
22328778 |
ccactgttaccaccatctgcagcattagcattaatattattagcattccaagccatcattctattcaatctgccgttatcatgttcctcttgatgctgct |
22328679 |
T |
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| Q |
311 |
gctgttgttgctgctcagaccacaaggtgcttccacttccaccaccgtcgtaaccaagggaggagtttccggcgaaaagcac |
392 |
Q |
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| T |
22328678 |
gctgttgttgctgctcagaccacaaggtgcttccacttccaccaccgtcgtaaccaagggaggagtttccggcgaaaagcac |
22328597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 436 - 541
Target Start/End: Complemental strand, 22328553 - 22328448
Alignment:
| Q |
436 |
ctctgaagcataataggatcttgaaaagattgcaatgagagacggagatcttgctgctgggtggttgccgccgttcgagagagtaaatccggcggctgtt |
535 |
Q |
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| T |
22328553 |
ctctgaagcataataggatcttgaaaagattgcaatgagagacggagatcttgctgctgggtggttgccgccgttcgagagagtaaatccggcggttgtt |
22328454 |
T |
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| Q |
536 |
gataat |
541 |
Q |
| |
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|||||| |
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| T |
22328453 |
gataat |
22328448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 2534998 - 2535105
Alignment:
| Q |
201 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
300 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
2534998 |
agcaccatggccactgttaccaccatctacagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgatcctct |
2535097 |
T |
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| Q |
301 |
tgatgctg |
308 |
Q |
| |
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|| ||||| |
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| T |
2535098 |
tgctgctg |
2535105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 11447860 - 11447753
Alignment:
| Q |
201 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
11447860 |
agcaccatggccactgttaccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgttcctct |
11447761 |
T |
|
| Q |
301 |
tgatgctg |
308 |
Q |
| |
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|| ||||| |
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| T |
11447760 |
tgctgctg |
11447753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 32507075 - 32507022
Alignment:
| Q |
90 |
atctatccaagcacgaactgaaggattgtaactggactgaaggggtcccctctg |
143 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32507075 |
atctaaccaagcacgaactgaaggattgtaactggactgaaggggtcccctctg |
32507022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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