View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_high_7 (Length: 430)
Name: NF20548_high_7
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_high_7 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Original strand, 26094685 - 26095109
Alignment:
| Q |
11 |
ttattctagcaaaatatgaaaatcatgtgtccttaactcattatgttgtgtaggtagaaagtaaattttgagaaatgaaaattataataaactttaa--- |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26094685 |
ttattctagcaaaatatgaaaatcatgtgtccttaactcattatgcagtgtaggtagaaagtaaattttgagaaatgaaaattacaataaactttaaatt |
26094784 |
T |
|
| Q |
108 |
--aaggcatctacaagaaccatgtagcttgtatttattaattgtttcttttcatttagctacacagttagtacaaaaggacttcgaacactatacttacc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26094785 |
aaaaggcatctacaagaaccatgtagcttgtatttattaattgtttcttttcatttagctacacagttagtacaaaaggacttcgaacactatacttacc |
26094884 |
T |
|
| Q |
206 |
acttctccaagtaatgaatccaaatagatcttccttgagtgaggttaaattagaggagaaaataacttcatagctttgttttttgcttctttttgtaaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26094885 |
acttctccaagtaatgaatccaaatagatcttccttgagtgatgttaaattagaggagaaaataacttgatagctttgttttttgcttctttttgtaaat |
26094984 |
T |
|
| Q |
306 |
tgaagcttctccgggatcaactggactttcaccccactcggagcattgacgacggctgagtagactatttcctcctcttcaccgacgtttgtaacaattc |
405 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26094985 |
tgaagcttctccggaatcaactggactttcaccccactcggagcattgacgacggctgagtagactatttcctcctcttcaccgacgtttgtaacaattc |
26095084 |
T |
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| Q |
406 |
tactcacattcaccgatcttttccc |
430 |
Q |
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|||| ||||||||||||| |||||| |
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| T |
26095085 |
tactgacattcaccgatcctttccc |
26095109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 132 - 418
Target Start/End: Original strand, 53422461 - 53422747
Alignment:
| Q |
132 |
cttgtatttattaattgtttcttttcatttagctacacagttagtacaaaaggacttcgaacactatacttaccacttctccaagtaatgaatccaaata |
231 |
Q |
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|||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||| ||| || ||||||| |||||| ||||||| | |
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| T |
53422461 |
cttgtatttatttatcgtttcttttcatttagctacggagatagtacaaaaggacttcgaacactatatttatcatttctccatgtaatggatccaaaga |
53422560 |
T |
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| Q |
232 |
gatcttccttgagtgaggttaaattagaggagaaaataacttcatagctttgttttttgcttctttttgtaaattgaagcttctccgggatcaactggac |
331 |
Q |
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|||| || || || | | ||||| | ||||||||||||||| |||||| ||||||||| |||||||||||||| || ||||| || ||||| ||||| |
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| T |
53422561 |
gatcatcgttcagcgggattaaagtgtaggagaaaataacttggtagcttatttttttgctactttttgtaaattggagtttctctggaatcaattggac |
53422660 |
T |
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| Q |
332 |
tttcaccccactcggagcattgacgacggctgagtagactatttcctcctcttcaccgacgtttgtaacaattctactcacattcac |
418 |
Q |
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|||||||||||| ||||||| |||| ||| ||||||||| |||| ||||||||||| || ||||||||| |||||||||||||||| |
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| T |
53422661 |
tttcaccccactaggagcatcaacgatggcggagtagactgtttcatcctcttcaccaacatttgtaacagttctactcacattcac |
53422747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 129 - 418
Target Start/End: Complemental strand, 48375395 - 48375106
Alignment:
| Q |
129 |
tagcttgtatttattaattgtttcttttcatttagctacacagttagtacaaaaggacttcgaacactatacttaccacttctccaagtaatgaatccaa |
228 |
Q |
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||||||||||||||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||| |||||| |||||| |
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| T |
48375395 |
tagcttgtatttatttatcgtttctttccatttagctacatagttagtacaaaaggacttcgaacactatatttaccgttactccatgtaatggatccaa |
48375296 |
T |
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| Q |
229 |
atagatcttccttgagtgaggttaaattagaggagaaaataacttcatagctttgttttttgcttctttttgtaaattgaagcttctccgggatcaactg |
328 |
Q |
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| ||||||||||| | ||||||||| ||| ||||||||| ||| |||||||||||||| | |||||||| ||||| || ||||| || |||| ||| |
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| T |
48375295 |
acagatcttccttcaacgaggttaaagtagtagagaaaatagcttggtagctttgttttttattgctttttgtgaattgtagtttctctggaatcagctg |
48375196 |
T |
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| Q |
329 |
gactttcaccccactcggagcattgacgacggctgagtagactatttcctcctcttcaccgacgtttgtaacaattctactcacattcac |
418 |
Q |
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|||||||| ||||| |||||||| || | ||| |||||| ||| ||| |||||||| || |||||||||||| |||||||||||||||| |
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| T |
48375195 |
aactttcacaccactaggagcattaactatggcagagtaggctacttcatcctcttcgccaacgtttgtaacagttctactcacattcac |
48375106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 176 - 418
Target Start/End: Original strand, 53430471 - 53430710
Alignment:
| Q |
176 |
tacaaaaggacttcgaacactatacttaccacttctccaagtaatgaatccaaatagatcttccttgagtgaggttaaattagaggagaaaataacttca |
275 |
Q |
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|||||||||||||||||||||||| ||| || ||||||| |||||| ||||||||||||||||||| || ||||||||||| |||||| ||||||| |
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| T |
53430471 |
tacaaaaggacttcgaacactatatttatcatttctccatgtaatggatccaaatagatcttcctttagcgaggttaaatt---ggagaagataacttgg |
53430567 |
T |
|
| Q |
276 |
tagctttgttttttgcttctttttgtaaattgaagcttctccgggatcaactggactttcaccccactcggagcattgacgacggctgagtagactattt |
375 |
Q |
| |
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|||||| | | ||||| |||||||||||||| || ||||| || ||||| ||||||||||||||||| ||||||| |||| ||| ||||||||| ||| |
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| T |
53430568 |
tagcttattctattgctactttttgtaaattggagtttctctggaatcaattggactttcaccccactaggagcatcaacgatggcggagtagactgttt |
53430667 |
T |
|
| Q |
376 |
cctcctcttcaccgacgtttgtaacaattctactcacattcac |
418 |
Q |
| |
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| T |
53430668 |
catcctcttcaccgacgtttgtaacagttctacttacattcac |
53430710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 340
Target Start/End: Original strand, 53319370 - 53319580
Alignment:
| Q |
132 |
cttgtatttattaattgtttcttttcatttagctacacagttagtacaaaaggacttcgaacactatacttaccacttctccaagtaatgaatccaaata |
231 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||| || ||||||||||||||||||| |||| |||||| | ||||| |||||| ||||||| | |
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| T |
53319370 |
cttgtatttatttattgtttcttttcatttatctacacagctaatacaaaaggacttcgaacagtatatttaccattactccatgtaatggatccaaaca |
53319469 |
T |
|
| Q |
232 |
gatcttccttgagtgaggttaaa--ttagaggagaaaataacttcatagctttgttttttgcttctttttgtaaattgaagcttctccgggatcaactgg |
329 |
Q |
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||||||||| | |||||||||| | ||||||||||||| || |||||| || ||||||| ||| |||||||||||| || || || ||||| | | |
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| T |
53319470 |
aatcttccttcattgaggttaaagtgtggaggagaaaataatttggtagcttagtgttttgctattttctgtaaattgaagtttatctggaatcaagtcg |
53319569 |
T |
|
| Q |
330 |
actttcacccc |
340 |
Q |
| |
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||||||||||| |
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| T |
53319570 |
actttcacccc |
53319580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 53307444 - 53307548
Alignment:
| Q |
312 |
ttctccgggatcaactggactttcaccccactcggagcattgacgacggctgagtagactatttcctcctcttcaccgacgtttgtaacaattctactca |
411 |
Q |
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||||| || ||||| |||| |||||||||| | ||||||| ||||| ||| |||||||||||| |||||||||||||| ||||| |||||||| |||| |
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| T |
53307444 |
ttctctggaatcaattggattttcaccccattgggagcatcgacgatggccatgtagactatttcatcctcttcaccgacttttgtgacaattctgctca |
53307543 |
T |
|
| Q |
412 |
cattc |
416 |
Q |
| |
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||||| |
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| T |
53307544 |
cattc |
53307548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 48375538 - 48375454
Alignment:
| Q |
20 |
caaaatatgaaaatcatgtgtccttaactcattatgttgt---gtaggtagaaagtaaattttgagaaatgaaaattataataaa |
101 |
Q |
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| T |
48375538 |
caaaatatgaaaatcatgtgaacttaactcattttaaaggcaagtacgtagaaagtaaattttgagaaattaaaattataataaa |
48375454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 53307280 - 53307343
Alignment:
| Q |
136 |
tatttattaattgtttcttttcatttagctacacagttagtacaaaaggacttcgaacactata |
199 |
Q |
| |
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|||||||| || ||||||||||||||| ||||| |||| |||||||||||| |||||| |||| |
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| T |
53307280 |
tatttatttatcgtttcttttcatttaattacacggttaatacaaaaggactccgaacattata |
53307343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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