View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20548_high_9 (Length: 368)
Name: NF20548_high_9
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 23041244 - 23040909
Alignment:
| Q |
14 |
catcaacgatcctaactgacagagtccacatgtcttttgaatcatcaatatctttgatatcatcaaaaggacgagcaacttcaacatgatcttccatcct |
113 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23041244 |
catcaacgatcctaattgacagagtccagatgtcttttgatg-----atatctttgatatcatcaaaaggacgagcaacttcaacatgatcttccatcct |
23041150 |
T |
|
| Q |
114 |
aatacaaacatcataacagatcgaagaaaaacacatgtttttagctatcttaaacacatcaaaattaaaacaatgaaatgaagaaaagcacatgctttta |
213 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23041149 |
aatacaaacatcataacagatccaagaaaaacacatgcttttagctatcttaaacacatcaaaattaaaacaatgaaatgaagaaaagcacatgctttta |
23041050 |
T |
|
| Q |
214 |
ggtatcttaaacacatcaaacatcaagtgattgtttagtgttaataaagattctaacacgtcctttaagtgaactctataagtgattataaacacatcaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23041049 |
ggtatcttaaacacatcaaacatcaagtgattgtttagtgttaataaagattctaacacgtcctttaagtgaactctataagtgattataaacacatcaa |
23040950 |
T |
|
| Q |
314 |
aacttaaaaccaccaaaatggatttctgagtattatagatg |
354 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040949 |
aatttaaaaccaccaaaatggatttctgagtattatagatg |
23040909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 23556982 - 23557043
Alignment:
| Q |
53 |
aatcatcaatatctttgatatcatcaaaaggacgagcaacttcaacatgatcttccatccta |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23556982 |
aatcatcgatatctttgatatcatcaaaaggacgagcaacttcagcatgatcttccatccta |
23557043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 27587600 - 27587259
Alignment:
| Q |
14 |
catcaacgatcctaactgacagagtccacatgtcttttgaatcatcaatatctttgatatcatcaaaaggacgagcaacttcaacatgatcttccatcct |
113 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27587600 |
catcaacgattctaactggcagagtccagatgtcttttgaatcatcaatatctttgatatcatcaaaaggacgagcaacttcaatatgatcttccatcct |
27587501 |
T |
|
| Q |
114 |
aatacaaacatcataacagatcgaagaaaaacacatgtttttagctatcttaaacacatcaaaa-ttaaaacaatgaaatgaagaaaagcacatgctttt |
212 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |
|
|
| T |
27587500 |
aatacaaacagcataacagatccaagaaaaactcatgcttttagctatcttaaacacatcaaaaattaaaacaatgaaatgtagaaaaacacatgctttt |
27587401 |
T |
|
| Q |
213 |
aggtatcttaaacacatcaaacatcaagtgattgtttagtgttaataaagattctaacacgtcctttaagtgaactctataagtgattataaacacatca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27587400 |
aggtatcttaaacacatcaaacatcaagtgattgtttagtgttaataaagcttgtaacacgtcctttaagtgaactctataagtgattataaacacatca |
27587301 |
T |
|
| Q |
313 |
aaacttaaaaccaccaaaatggatttctgagtattatagatg |
354 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
27587300 |
aaacttaaaaccacgaaaatggatttctgagtattacagatg |
27587259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 23972069 - 23972147
Alignment:
| Q |
119 |
aaacatcataacagatcgaagaaaaacacatgtttttagctatcttaaacacatc-aaaattaaaacaatgaaatgaag |
196 |
Q |
| |
|
|||||||||||||||| |||| |||||||| |||||| || ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
23972069 |
aaacatcataacagatgcaagataaacacatacttttagtgatattaaacacatcaaaaattaaaacaaacaaatgaag |
23972147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University