View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20548_low_1 (Length: 637)
Name: NF20548_low_1
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 20 - 620
Target Start/End: Complemental strand, 47579729 - 47579128
Alignment:
| Q |
20 |
aacaccaacaacaaaaatggagcatgnnnnnnnnngtacacatgaacctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47579729 |
aacaccaacaacaaaaatggagcatgaaaaaaaa-gtacacatgaacctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataa |
47579631 |
T |
|
| Q |
120 |
ttggtatcatgtaagtgtatgaaccaacaactacacttggcaatcgggttccgaataaagattgaagaaacgtgcttagtccggaaacaaacaacgtact |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
47579630 |
ttggtatcatgtaagtgtatgaaccaacaactacacttggcaatcgggttccgaataaagattgaagaaacgtgctcagtccagaaacaaacaacgtact |
47579531 |
T |
|
| Q |
220 |
ctgaatcaccttggccttctccaactacgttgaaacaaagatttcagctaattgactaaattcatactgttgtaaaacatgaaattcatttaagaaggca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47579530 |
ctgaatcaccttggccttctccaactacgttgaaacaaagatttcagctaattgactaaattcatactgttgtaaaacatgaaattcatttaagaaagcg |
47579431 |
T |
|
| Q |
320 |
aaaatgtaacacnnnnnnnnn--gtgtttacattgcttccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagtcagaatgta |
417 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47579430 |
aaaatgtaacaaaaaaaaaaaaagtgtttacattgcttccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagtcaaaatgta |
47579331 |
T |
|
| Q |
418 |
atgctggaaccctaataaaagtgcttcagctgcattttagtaacaaaattaaattaaaaagcaagaaagtatatttgttgaaaatacatagagacttgat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47579330 |
atgctggaaccctaataaaagtgcttcagctgcattttagtaacaaaattaaattaaaaagcaagaaagtatatttgttgaaaatacatagagacttgat |
47579231 |
T |
|
| Q |
518 |
taatttgtttcatgaaaataatcttccaaaaacgaacaaaatgcttagtcattgaaatcatttcacatttgttggttgatataataagaatcattgttat |
617 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47579230 |
taatttgtttcatgagaataatcttccaaaaacgaacaaaatgcttattcattgaaatcatttcacatttgttggttgatataataagaatcattgttat |
47579131 |
T |
|
| Q |
618 |
att |
620 |
Q |
| |
|
||| |
|
|
| T |
47579130 |
att |
47579128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 8683382 - 8683237
Alignment:
| Q |
65 |
acctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatc |
164 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||||||| |||||| || || || ||||| |||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
8683382 |
acctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatc |
8683283 |
T |
|
| Q |
165 |
gggttccgaataaagattgaagaaacgtgcttagtccggaaacaaa |
210 |
Q |
| |
|
| |||||||| |||||||||| ||| ||||||||||| || ||||| |
|
|
| T |
8683282 |
gagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaa |
8683237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 8683104 - 8683036
Alignment:
| Q |
355 |
tccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagtcagaatgtaatgctg |
423 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||| ||||||||| |
|
|
| T |
8683104 |
tccacccatttgaggaacaattatagttggaatcagaactgtaatgccaagagttagaaggtaatgctg |
8683036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University