View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_low_12 (Length: 363)
Name: NF20548_low_12
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 444849 - 445093
Alignment:
| Q |
9 |
agcagagaagcaggtatctcttatgacaacagaagaaagagttcagactggttttcccattatgtgatgaaaagaagagggaagaagtcagagagcaaga |
108 |
Q |
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| T |
444849 |
agcagagatgcaggtatctcttatgacaacggaagaaagagttcagactggttttcccattatgtgatgaaaagaagagggaagaagtcagagagcaaga |
444948 |
T |
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| Q |
109 |
gaaagaagtggagtaaaagtagttattttatgcatgcatattttttattgttagcttggcgcaagaaatgtgattccatccatatccacccctatgatct |
208 |
Q |
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| T |
444949 |
gaaagaagtggagtaaaagtagttattttatgcatgcatattttttattgtta----ggcgcaagaaatgtgatgccatccatatccacccctatgatct |
445044 |
T |
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| Q |
209 |
gcaactatatatgtagacagacttaaatctgtatttgaatgtcatcaattgtt |
261 |
Q |
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| T |
445045 |
gcaac----tatgtagacagacttaaatctgtatttgaatgtcatcaattgtt |
445093 |
T |
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