View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20548_low_13 (Length: 331)
Name: NF20548_low_13
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 40284660 - 40284975
Alignment:
| Q |
1 |
atataatgaatttgtagtactctatggaaggaaggttttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40284660 |
atataatgaatttgtagtactctatggaaggaaggatttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggca |
40284759 |
T |
|
| Q |
101 |
cctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacgccctatcatttgacctaacagcaagaacaaccaattgatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40284760 |
cctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacaccctatcatttgacctaacagcaagaacaaccaattgatgt |
40284859 |
T |
|
| Q |
201 |
ttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatccattcaccgggtgcacgatcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40284860 |
ttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatccattcaccgggtgcacgatcaca |
40284959 |
T |
|
| Q |
301 |
catctcgttccttctt |
316 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
40284960 |
catctcattccttctt |
40284975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 40279707 - 40280014
Alignment:
| Q |
9 |
aatttgtagtactctatggaaggaaggttttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40279707 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
40279806 |
T |
|
| Q |
109 |
gtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacgccctatcatttgacctaacagcaagaacaaccaattgatgtttctcttc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
40279807 |
gtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttc |
40279906 |
T |
|
| Q |
209 |
tttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatccattcaccgggtgcacgatcacacatctcgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40279907 |
tttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaacgggtgcacgatcacacatctcgt |
40280006 |
T |
|
| Q |
309 |
tccttctt |
316 |
Q |
| |
|
|||||||| |
|
|
| T |
40280007 |
tccttctt |
40280014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 40458643 - 40458336
Alignment:
| Q |
9 |
aatttgtagtactctatggaaggaaggttttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458643 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
40458544 |
T |
|
| Q |
109 |
gtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacgccctatcatttgacctaacagcaagaacaaccaattgatgtttctcttc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
40458543 |
gtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttc |
40458444 |
T |
|
| Q |
209 |
tttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatccattcaccgggtgcacgatcacacatctcgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40458443 |
tttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaacgggtgcacgatcacacatctcgt |
40458344 |
T |
|
| Q |
309 |
tccttctt |
316 |
Q |
| |
|
|||||||| |
|
|
| T |
40458343 |
tccttctt |
40458336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 39781506 - 39781352
Alignment:
| Q |
125 |
ttgcagaaatacttcaattgatcgagcttgcaacgccctatcatttgacctaacagcaagaacaaccaattgatgtttctcttctttgtcatcaatggat |
224 |
Q |
| |
|
||||||||||||||||| || | |||||||||| ||| ||||| ||||| || | ||||||||||||||| ||| ||||||||||||| || | ||||| |
|
|
| T |
39781506 |
ttgcagaaatacttcaaatgttgaagcttgcaacacccaatcatctgacccaataacaagaacaaccaattaatggttctcttctttgtgattattggat |
39781407 |
T |
|
| Q |
225 |
gcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatcca |
279 |
Q |
| |
|
||| || || |||| |||||| | ||||| || || | ||||||||||||||| |
|
|
| T |
39781406 |
tcatagcattttcttgtccacacttgtcgcatttgggaagcacaggattcatcca |
39781352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 279
Target Start/End: Original strand, 39600421 - 39600621
Alignment:
| Q |
79 |
ataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacgccctatcatttgacctaac |
178 |
Q |
| |
|
||||||||| | |||||||||||| || || || |||| ||||||||||||||| ||||| || | |||||||||| ||| ||||| ||||| ||| |
|
|
| T |
39600421 |
ataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac |
39600520 |
T |
|
| Q |
179 |
agcaagaacaaccaattgatgtttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatcc |
278 |
Q |
| |
|
| ||| |||||||||||||| ||||||||||||| || | ||||| ||| || || |||| |||||| | ||||| || || | || ||||||||||| |
|
|
| T |
39600521 |
aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcgttttcttgtccacacttttcgcactttggaagcataggattcatcc |
39600620 |
T |
|
| Q |
279 |
a |
279 |
Q |
| |
|
| |
|
|
| T |
39600621 |
a |
39600621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University